Browse Element(s) Details


Os.5032.1.S1_at

Description gb:AK071012.1
DB_XREF= gi:32981035
TID=Os.5032.1
CNT=51
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5032 (NCBI UniGene Cluster)
UG_TITLE=MRNA for amylogenin
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079O10, full insert sequence.
FL= gb:AK071012.1 gb:AK104316.1 gb:AK058644.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5652010/11Reversibly glycosylated polypeptide family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56500Os.19465.1.S1_at11/114+33463155..33464467expressed protein
LOC_Os04g56510Os.20414.1.S1_at11/114+33478649..33484540ABC1 family protein, putative, expressed
LOC_Os04g56520Os.5032.1.S1_at10/114+33485810..33488270Reversibly glycosylated polypeptide family protein, expressed
LOC_Os04g56530Os.11626.1.S1_at11/114+33488354..33500162MAP3K epsilon protein kinase, putative, expressed
LOC_Os04g56540OsAffx.26634.1.S1_s_at11/114+33500837..33504190expressed protein
LOC_Os04g56540Os.18047.1.S1_at7/114+33500837..33504190expressed protein
LOC_Os04g56550OsAffx.8091.2.S1_at11/114+33506025..33508152hypothetical protein
LOC_Os04g56550Os.21891.1.S1_at1/114+33506025..33508152hypothetical protein
LOC_Os04g56560Os.55838.1.S1_at11/114+33510736..33513430POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0000138cellular_componentGolgi trans cisterna
GO:0005795cellular_componentGolgi stack
GO:0016020cellular_componentmembrane
GO:0016760molecular_functioncellulose synthase (UDP-forming) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5032.1.S1_at--21--10571Chr04:33487763..33487787 (25 bp)
TTCTTCCCTTCTTCGAATCTCTGAA
LOC_Os04g56520
Os.5032.1.S1_at--852--7631Chr04:33487857..33487881 (25 bp)
GGGACCGCAGAATGCAATCTTCGCT
LOC_Os04g56520
Os.5032.1.S1_at--823--5191Chr04:33487870..33487894 (25 bp)
GCAATCTTCGCTAAAGCTGCTGATG
LOC_Os04g56520
Os.5032.1.S1_at--974--9471Chr04:33487978..33488002 (25 bp)
TCTGATTTCGATACCCACTGTTATG
LOC_Os04g56520
Os.5032.1.S1_at--776--2371Chr04:33488012..33488036 (25 bp)
AAACCGCATTCCTGTATGCTGGGAA
LOC_Os04g56520
Os.5032.1.S1_at--21--4711Chr04:33488029..33488053 (25 bp)
GCTGGGAATTTTCTCGTTAGTGTAC
LOC_Os04g56520
Os.5032.1.S1_at--177--6791Chr04:33488044..33488068 (25 bp)
GTTAGTGTACGCTCCAATACTCGTG
LOC_Os04g56520
Os.5032.1.S1_at--617--3091Chr04:33488059..33488083 (25 bp)
AATACTCGTGCCGTTTTCAAAGACA
LOC_Os04g56520
Os.5032.1.S1_at--1015--3191Chr04:33488101..33488125 (25 bp)
CAATGCTGTGTATCTTGTGTGTTAC
LOC_Os04g56520
Os.5032.1.S1_at--236--6531Chr04:33488148..33488172 (25 bp)
GATTTCGTTCATAGTTTTCAGACAT
LOC_Os04g56520
Os.5032.1.S1_at--216--1411NONE
AGACATCTGTTTCCAGTCACACGTT
NONE
Target Sequence 
TTCTTCCCTTCTTCGAATCTCTGAAGCTATCGAGTACTTCAGTTACTGTTGAAGACTGTGTTAAGGAACTAACCAGCATT
GTCAAGGAGAAACTGGGACCGCAGAATGCAATCTTCGCTAAAGCTGCTGATGCAATGGAGGAATGGACCAAACTCTGGAA
ATCTCACGGAGCNCAAAGCGCTTAGGCTGAAATTTGGTTATCTGTTATGAGCATATCTGATTTCGATACCCACTGTTATG
AAACTGAATAAACCGCATTCCTGTATGCTGGGAATTTTCTCGTTAGTGTACGCTCCAATACTCGTGCCGTTTTCAAAGAC
AAGCAGTGATATGCAAAGCAATGCTGTGTATCTTGTGTGTTACATCNAGGAGTTTTTTTTAATGGTGATTTCGTTCATAG
TTTTCAGACATCTGTTTCCAGTCACACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis