Browse Element(s) Details


Os.19465.1.S1_at

Description gb:AK109923.1
DB_XREF= gi:32995132
TID=Os.19465.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-C02, full insert sequence.
FL= gb:AK109923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5650011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56460OsAffx.14435.1.S1_at11/114+33439264..33440325BTB/POZ domain containing protein, expressed
LOC_Os04g56470OsAffx.14436.1.S1_at11/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56470Os.26885.1.A1_at1/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56480Os.27464.1.S1_s_at9/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56480Os.49404.1.S1_at8/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56490Os.57354.1.S1_at11/114+33457256..33457852expressed protein
LOC_Os04g56500Os.19465.1.S1_at11/114+33463155..33464467expressed protein
LOC_Os04g56510Os.20414.1.S1_at11/114+33478649..33484540ABC1 family protein, putative, expressed
LOC_Os04g56520Os.5032.1.S1_at10/114+33485810..33488270Reversibly glycosylated polypeptide family protein, expressed
LOC_Os04g56530Os.11626.1.S1_at11/114+33488354..33500162MAP3K epsilon protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19465.1.S1_at--234--4131Chr04:33463696..33463720 (25 bp)
CGCAGGTGCAGCTGATGCAAGGCCT
LOC_Os04g56500
Os.19465.1.S1_at--159--1711Chr04:33463654..33463678 (25 bp)
ACCAATGATCCATCCATCGAGTAAT
LOC_Os04g56500
Os.19465.1.S1_at--433--10211Chr04:33463605..33463629 (25 bp)
TATTTATTCGTTCGTCTTGCACGCA
LOC_Os04g56500
Os.19465.1.S1_at--631--10731Chr04:33463589..33463613 (25 bp)
TTGCACGCATCACATGCTGCTGTTG
LOC_Os04g56500
Os.19465.1.S1_at--1110--10711Chr04:33463567..33463591 (25 bp)
TTGCTGCTTCTGTTCTACTTCTCTA
LOC_Os04g56500
Os.19465.1.S1_at--725--2051Chr04:33463551..33463575 (25 bp)
ACTTCTCTACCTACATCATATCGAT
LOC_Os04g56500
Os.19465.1.S1_at--497--10151Chr04:33463533..33463557 (25 bp)
TATCGATCTATCTCTTGTTCATGTG
LOC_Os04g56500
Os.19465.1.S1_at--244--9591Chr04:33463521..33463545 (25 bp)
TCTTGTTCATGTGGATCGATCGATC
LOC_Os04g56500
Os.19465.1.S1_at--62--6611Chr04:33463359..33463383 (25 bp)
GATTGTTGGATACATACATCCATGT
LOC_Os04g56500
Os.19465.1.S1_at--993--6871Chr04:33463336..33463360 (25 bp)
GTATAGAAGTATAGGCCGACCGGCT
LOC_Os04g56500
Os.19465.1.S1_at--479--1171Chr04:33463156..33463180 (25 bp)
AGTAAATCGATCTATATATCTGCGT
LOC_Os04g56500
Target Sequence 
CGCAGGTGCAGCTGATGCAAGGCCTCGTCGACCTCTTCTCCTACCAATGATCCATCCATCGAGTAATTAACATATGCATC
ATATGGTTAATTATTTATTCGTTCGTCTTGCACGCATCACATGCTGCTGTTGCTGCTTCTGTTCTACTTCTCTACCTACA
TCATATCGATCTATCTCTTGTTCATGTGGATCGATCGATCGATGCATATGATGGTTGGTTAAGATAGGGGATTATTATTG
GGGTAATTAAGGGGAGGATCTAGGAGATTGGGTGGAGTGTTAGTATACATGTTTTTTGTTTTTGTTGGTAATTAAGATTA
TTGGTAGGTGATGAAAAGATTGTTGGATACATACATCCATGTATAGAAGTATAGGCCGACCGGCTGGGAGCNCAATGAAT
TGAATCATATATACCAAGAAGAAGGNCTTTATAGAGAGAGAGAGAGAGAGGGGTAATTAATTGTAACATATAAAGAGAAG
GATGAAGTTNCATATACTATATGATAGTGAATTAGTGCAGTGTTAATTNTTGTCAATTGTCAGTAAATCGATCTATATAT
CTGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis