Browse Element(s) Details


OsAffx.14435.1.S1_at

Description tigr:9632.m05502
TID=OsAffx.14435.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5646011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56420Os.54165.1.S1_at10/114+33416837..33419323expressed protein
LOC_Os04g56430Os.1606.1.S1_at11/114+33422225..33423252receptor-like protein kinase 6, putative, expressed
LOC_Os04g56440Os.38313.1.S1_at10/114+33426039..33431062ENT domain containing protein, expressed
LOC_Os04g56450Os.172.2.S1_a_at11/114+33430036..33434781Protein phosphatase 2C containing protein, expressed
LOC_Os04g56460OsAffx.14435.1.S1_at11/114+33439264..33440325BTB/POZ domain containing protein, expressed
LOC_Os04g56470OsAffx.14436.1.S1_at11/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56470Os.26885.1.A1_at1/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56480Os.27464.1.S1_s_at9/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56480Os.49404.1.S1_at8/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56490Os.57354.1.S1_at11/114+33457256..33457852expressed protein
LOC_Os04g56500Os.19465.1.S1_at11/114+33463155..33464467expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14435.1.S1_at--120--8951Chr04:33439736..33439760 (25 bp)
TGACGGTGCGCTGCACCATGCACGT
LOC_Os04g56460
OsAffx.14435.1.S1_at--564--7271Chr04:33439839..33439863 (25 bp)
GTGCCACGCCAGGAACGCCATGGAG
LOC_Os04g56460
OsAffx.14435.1.S1_at--262--4031Chr04:33439886..33439910 (25 bp)
CGTTCGACCTGGAGATCCACGTCGG
LOC_Os04g56460
OsAffx.14435.1.S1_at--503--1151Chr04:33439952..33439976 (25 bp)
AGTCGCTCTACTTCCGGAAGCTCCT
LOC_Os04g56460
OsAffx.14435.1.S1_at--703--9231Chr04:33439973..33439997 (25 bp)
TCCTCTACGGCCAGGTCGGGAACGA
LOC_Os04g56460
OsAffx.14435.1.S1_at--417--4751Chr04:33440172..33440196 (25 bp)
GCTGATGTGCGCGAGCAACCTGTGC
LOC_Os04g56460
OsAffx.14435.1.S1_at--413--2631Chr04:33440188..33440212 (25 bp)
AACCTGTGCCGCTTCATCGGCGACG
LOC_Os04g56460
OsAffx.14435.1.S1_at--514--1631Chr04:33440221..33440245 (25 bp)
AGCGGCATCATGGAGTTGGCAAAAG
LOC_Os04g56460
OsAffx.14435.1.S1_at--102--10871Chr04:33440236..33440260 (25 bp)
TTGGCAAAAGCGCACTCGTGCGATC
LOC_Os04g56460
OsAffx.14435.1.S1_at--1017--9411Chr04:33440251..33440275 (25 bp)
TCGTGCGATCCGCTCAAGAAAGCGT
LOC_Os04g56460
OsAffx.14435.1.S1_at--1138--5551Chr04:33440268..33440292 (25 bp)
GAAAGCGTGCGAAAATTACATGAAA
LOC_Os04g56460
Target Sequence 
TGACGGTGCGCTGCACCATGCACGTCATCCAGCGCCGCCGCGGCGCCGGCCGGCCCGTCGTCACCGGCGCCGGCGGCCCC
GTCCGCGTGCCCGTGCCGCCGTCGTGCCACGCCAGGAACGCCATGGAGTTCCTCCTCAGCGGCGACGCCCCGTTCGACCT
GGAGATCCACGTCGGCGACGCGACGTTCGGGGCGCACCGCCTCGCGCTCGCCGGCCAGTCGCTCTACTTCCGGAAGCTCC
TCTACGGCCAGGTCGGGAACGAGGCGAGCTCGCCGGCGATCCGCCTCCGGGAGATGAGCCCGGAGGCGTTCGGCGCCGTG
CTCCACTACGTCTACCACGACAGCCTGCCGCCGGAGGCGAACAAGGGCCGGAACGCGGCTGCCATGGCGCGGGAGGTGTT
CGAGGCCGCCGACATGTACGCCATGGAGAGGCTGAAGCTGATGTGCGCGAGCAACCTGTGCCGCTTCATCGGCGACGACA
CCGCGAGCGGCATCATGGAGTTGGCAAAAGCGCACTCGTGCGATCCGCTCAAGAAAGCGTGCGAAAATTACATGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis