Browse Element(s) Details


Os.27464.1.S1_s_at

Description gb:AK073962.1
DB_XREF= gi:32983985
TID=Os.27464.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27464 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072B10, full insert sequence.
FL= gb:AK073962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g564809/11Protein pelota, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56430Os.1606.1.S1_at11/114+33422225..33423252receptor-like protein kinase 6, putative, expressed
LOC_Os04g56440Os.38313.1.S1_at10/114+33426039..33431062ENT domain containing protein, expressed
LOC_Os04g56450Os.172.2.S1_a_at11/114+33430036..33434781Protein phosphatase 2C containing protein, expressed
LOC_Os04g56460OsAffx.14435.1.S1_at11/114+33439264..33440325BTB/POZ domain containing protein, expressed
LOC_Os04g56470OsAffx.14436.1.S1_at11/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56470Os.26885.1.A1_at1/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56480Os.27464.1.S1_s_at9/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56480Os.49404.1.S1_at8/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56490Os.57354.1.S1_at11/114+33457256..33457852expressed protein
LOC_Os04g56500Os.19465.1.S1_at11/114+33463155..33464467expressed protein
LOC_Os04g56510Os.20414.1.S1_at11/114+33478649..33484540ABC1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006415biological_processtranslational termination
GO:0007126biological_processmeiosis
GO:0003747molecular_functiontranslation release factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27464.1.S1_s_at--604--51Chr04:33451375..33451399 (25 bp)
ATTGTTCTTGCACATGCACCTTCAG
LOC_Os04g56480
Os.27464.1.S1_s_at--858--9031NONE
TGCACCTTCAGGTTACAAGCATAGC
NONE
Os.27464.1.S1_s_at--770--3371Chr04:33452817..33452841 (25 bp)
CAGCTCGAGCTTGTTATGGACCTAA
LOC_Os04g56480
Os.27464.1.S1_s_at--99--8991Chr04:33452860..33452884 (25 bp)
TGAACGTCTTGCTATCCAAACTCTT
LOC_Os04g56480
Os.27464.1.S1_s_at--180--10771Chr04:33452900..33453142 (25 bp)
TTGTTTCGGAACTCTGACATTGCAA
LOC_Os04g56480
Os.27464.1.S1_s_at--897--5111Chr04:33453191..33453215 (25 bp)
GCACAGTGCACATCTTTTCTTCAAT
LOC_Os04g56480
Os.27464.1.S1_s_at--967--2131NONE
ACAGTTGGCGCAGTTGACAGGAATC
NONE
Os.27464.1.S1_s_at--209--10631Chr04:33453461..33453485 (25 bp)
TTCCCTTGCCAGATTTAGAGGACAT
LOC_Os04g56480
Os.27464.1.S1_s_at--302--9751Chr04:33453496..33453520 (25 bp)
TAATTCCACCGTTCAGAATTGGCAA
LOC_Os04g56480
Os.27464.1.S1_s_at--743--111Chr04:33453535..33453559 (25 bp)
ATTCATGTGTAATCCTATTCAGTTG
LOC_Os04g56480
Os.27464.1.S1_s_at--173--10151Chr04:33453600..33453624 (25 bp)
TATCCTAGCTGTAAATGGTTTGCAT
LOC_Os04g56480
Target Sequence 
ATTGTTCTTGCACATGCACCTTCAGGTTACAAGCATAGCCTGAAGGAAGTTTTGGATAGCCCAAGTGTGATGACACTAAT
AAAAGATACAAAGGCGGCGCAGGAGGTCCAAGCTTTGAAGGACTTCTTCAACATGCTTACAAATGATTCAGCTCGAGCTT
GTTATGGACCTAAGCATGTTGAGATTGCAAATGAACGTCTTGCTATCCAAACTCTTTTAATAACAGATAATTTGTTTCGG
AACTCTGACATTGCAACGAGGCAAAATTATGTGCGCTTGGTTGAATCGGTAAAAAAATTCGGTGGCACAGTGCACATCTT
TTCTTCAATGCATGTCTNTGGTGAACAGTTGGCGCAGTTGACAGGAATCGCAGCTATACTTCGATTTCCCTTGCCAGATT
TAGAGGACATTGAGATGTGATAATTCCACCGTTCAGAATTGGCAATATGCTAACTTGTAATTCATGTGTAATCCTATTCA
GTTGATTNGATATAGGTAACTCTTAAGAAATCTGAACCACAGTATATCCTAGCTGTAAATGGTTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27464.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis