Browse Element(s) Details


Os.49404.1.S1_at

Description gb:AK060780.1
DB_XREF= gi:32970798
TID=Os.49404.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-033-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-C05, full insert sequence.
FL= gb:AK060780.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g564808/11Protein pelota, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56430Os.1606.1.S1_at11/114+33422225..33423252receptor-like protein kinase 6, putative, expressed
LOC_Os04g56440Os.38313.1.S1_at10/114+33426039..33431062ENT domain containing protein, expressed
LOC_Os04g56450Os.172.2.S1_a_at11/114+33430036..33434781Protein phosphatase 2C containing protein, expressed
LOC_Os04g56460OsAffx.14435.1.S1_at11/114+33439264..33440325BTB/POZ domain containing protein, expressed
LOC_Os04g56470OsAffx.14436.1.S1_at11/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56470Os.26885.1.A1_at1/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56480Os.27464.1.S1_s_at9/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56480Os.49404.1.S1_at8/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56490Os.57354.1.S1_at11/114+33457256..33457852expressed protein
LOC_Os04g56500Os.19465.1.S1_at11/114+33463155..33464467expressed protein
LOC_Os04g56510Os.20414.1.S1_at11/114+33478649..33484540ABC1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006415biological_processtranslational termination
GO:0007126biological_processmeiosis
GO:0003747molecular_functiontranslation release factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49404.1.S1_at--966--611NONE
ATGCTTACAAATGTAAAGCTCCTTG
NONE
Os.49404.1.S1_at--160--10491NONE
TTACAAATGTAAAGCTCCTTGAAGA
NONE
Os.49404.1.S1_at--1021--4771NONE
GCTCCTTGAAGAAAAACTACCTTCT
NONE
Os.49404.1.S1_at--890--1991Chr04:33452457..33452481 (25 bp)
ACTACCTTCTAACAGTTGGATTGAA
LOC_Os04g56480
Os.49404.1.S1_at--641--1732Chr04:33452460..33452484 (25 bp)
ACCTTCTAACAGTTGGATTGAAATA
LOC_Os04g56480
Os.49404.1.S1_at--586--6592Chr04:33452475..33452499 (25 bp)
GATTGAAATATCCTACTCCATCCGT
LOC_Os04g56480
Os.49404.1.S1_at--196--10754Chr11:7423665..7423709 (24 bp)
TTGAAATATCCTACTCCATCCGTTT
NONE
Os.49404.1.S1_at--687--551Chr04:33452494..33452823 (25 bp)
ATCCGTTTCATATTGATTCAGCTCG
LOC_Os04g56480
Os.49404.1.S1_at--740--4031Chr04:33452497..33452826 (25 bp)
CGTTTCATATTGATTCAGCTCGAGC
LOC_Os04g56480
Os.49404.1.S1_at--935--10271Chr04:33453618..33453642 (25 bp)
TTTGCATGCCATATTTGTTGATTGT
LOC_Os04g56480
Os.49404.1.S1_at--298--4991Chr04:33453621..33453645 (25 bp)
GCATGCCATATTTGTTGATTGTTTT
LOC_Os04g56480
Target Sequence 
ATGCTTACAAATGTAAAGCTCCTTGAAGAAAAACTACCTTCTAACAGTTGGATTGAAATATCCTACTCCATCCGTTTCAT
ATTGATTCAGCTCGAGCTTGTTATGGACCTAAGCATGTTGAGATTGCAAATGAACGTCTTGCTATCCAAACTCTTTTAAT
AACAGATAATTTGTTTCGGAACTCTGACATTGCAACGAGGCAAAATTATGTGCGCTTGGTTGAATCGGTAAAAAAATTCG
GTGGCACAGTGCACATCTTTTCTTCAATGCATGTCTCTGGTGAACAGTTGGCGCAGTTGACAGGAATCGCAGCTATACTT
CGATTTCCCTTGCCAGATTTAGAGGACATTGAGATGTGATAATTCCACCGTTCAGAATTGGCAATATGCTAACTTGTAAT
TCATGTGTAATCCTATTCAGTTGATTTGATATAGGTAACTCTTAAGAAATCTGAACCACAGTATATCCTAGCTGTAAATG
GTTTGCATGCCATATTTGTTGATTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis