Browse Element(s) Details


OsAffx.14436.1.S1_at

Description tigr:9632.m05503
TID=OsAffx.14436.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transmembrane amino acid transporter protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5647011/11amino acid transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56420Os.54165.1.S1_at10/114+33416837..33419323expressed protein
LOC_Os04g56430Os.1606.1.S1_at11/114+33422225..33423252receptor-like protein kinase 6, putative, expressed
LOC_Os04g56440Os.38313.1.S1_at10/114+33426039..33431062ENT domain containing protein, expressed
LOC_Os04g56450Os.172.2.S1_a_at11/114+33430036..33434781Protein phosphatase 2C containing protein, expressed
LOC_Os04g56460OsAffx.14435.1.S1_at11/114+33439264..33440325BTB/POZ domain containing protein, expressed
LOC_Os04g56470OsAffx.14436.1.S1_at11/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56470Os.26885.1.A1_at1/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56480Os.27464.1.S1_s_at9/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56480Os.49404.1.S1_at8/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56490Os.57354.1.S1_at11/114+33457256..33457852expressed protein
LOC_Os04g56500Os.19465.1.S1_at11/114+33463155..33464467expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015800biological_processacidic amino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0015804biological_processneutral amino acid transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
GO:0015399molecular_functionprimary active transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14436.1.S1_at--151--291Chr04:33444409..33444433 (25 bp)
ATAGACTTCGCCAATGCCTGCATCG
LOC_Os04g56470
OsAffx.14436.1.S1_at--17--9271Chr04:33444443..33444558 (25 bp)
TCCTCGGCGGCTACCAGATGTTTAG
LOC_Os04g56470
OsAffx.14436.1.S1_at--1072--3711Chr04:33444548..33444568 (21 bp)
CTACCAGATGTTTAGCCAGCAGATA
LOC_Os04g56470
OsAffx.14436.1.S1_at--777--4411Chr04:33444558..33444582 (25 bp)
GCCAGCAGATATTCACGTTCGCCGA
LOC_Os04g56470
OsAffx.14436.1.S1_at--652--2471Chr04:33444608..33444632 (25 bp)
AACAGCGCGTTCGTGAACAGGTCGT
LOC_Os04g56470
OsAffx.14436.1.S1_at--439--8971Chr04:33444621..33444645 (25 bp)
TGAACAGGTCGTACTCCGTCAAGAT
LOC_Os04g56470
OsAffx.14436.1.S1_at--502--2631Chr04:33444698..33444722 (25 bp)
AACCTGCAGCGGGTGTGCTTCAGGA
LOC_Os04g56470
OsAffx.14436.1.S1_at--413--4251Chr04:33444831..33444855 (25 bp)
CCGTCGAGATGTACTGCGTGCAGCG
LOC_Os04g56470
OsAffx.14436.1.S1_at--409--8751Chr04:33444840..33444864 (25 bp)
TGTACTGCGTGCAGCGGCGGATCTC
LOC_Os04g56470
OsAffx.14436.1.S1_at--865--9051Chr04:33444891..33444915 (25 bp)
TGCAGGCGTTCAGCGTCGTCTGCTT
LOC_Os04g56470
OsAffx.14436.1.S1_at--35--5091Chr04:33444924..33444948 (25 bp)
GCACGTTCGCGTTCGTCGGCTCGGT
LOC_Os04g56470
Target Sequence 
ATAGACTTCGCCAATGCCTGCATCGTGCTCCACCTCCTCGGCGGCTACCAGATGTTTAGCCAGCAGATATTCACGTTCGC
CGACCGGTGCTTCGCGGCGAGCTTCCCGAACAGCGCGTTCGTGAACAGGTCGTACTCCGTCAAGATCCTCCCGTGGCGGC
GCGGCGGCGGCGGCGGCGGCGCGGGGAGGTACGAGGTGAACCTGCAGCGGGTGTGCTTCAGGACGGTGTACGTGGCGAGC
ACGACGGGGCTGGCGCTGGTGTTCCCCTACTTCAACGAGGTGCTGGGCGTGCTCGGCGCGCTCGTGTTCTGGCCGCTCGC
CATCTACCTCCCCGTCGAGATGTACTGCGTGCAGCGGCGGATCTCGCCGTGGACGCCGCGGTGGGCCGCGCTGCAGGCGT
TCAGCGTCGTCTGCTTCGTCGTCGGCACGTTCGCGTTCGTCGGCTCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis