Browse Element(s) Details


Os.11626.1.S1_at

Description gb:AK099839.1
DB_XREF= gi:32985048
TID=Os.11626.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013107K18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107K18, full insert sequence.
FL= gb:AK099839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5653011/11MAP3K epsilon protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56500Os.19465.1.S1_at11/114+33463155..33464467expressed protein
LOC_Os04g56510Os.20414.1.S1_at11/114+33478649..33484540ABC1 family protein, putative, expressed
LOC_Os04g56520Os.5032.1.S1_at10/114+33485810..33488270Reversibly glycosylated polypeptide family protein, expressed
LOC_Os04g56530Os.11626.1.S1_at11/114+33488354..33500162MAP3K epsilon protein kinase, putative, expressed
LOC_Os04g56540OsAffx.26634.1.S1_s_at11/114+33500837..33504190expressed protein
LOC_Os04g56540Os.18047.1.S1_at7/114+33500837..33504190expressed protein
LOC_Os04g56550OsAffx.8091.2.S1_at11/114+33506025..33508152hypothetical protein
LOC_Os04g56550Os.21891.1.S1_at1/114+33506025..33508152hypothetical protein
LOC_Os04g56560Os.55838.1.S1_at11/114+33510736..33513430POT family protein, expressed
LOC_Os04g56570OsAffx.26635.1.S1_at11/114+33514532..33515250heavy metal-associated domain containing protein, expressed
LOC_Os04g56580Os.54256.1.S1_at11/114+33516069..33520302expressed protein
LOC_Os04g56580OsAffx.26636.1.S1_x_at11/114+33516069..33520302expressed protein
LOC_Os04g56590Os.24672.1.S1_at9/114+33521336..33527897ATP/GTP binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006979biological_processresponse to oxidative stress
GO:0009908biological_processflower development
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11626.1.S1_at--347--10771Chr04:33489097..33489121 (25 bp)
TTGACCACCGAGAAGCTATTGCCCG
LOC_Os04g56530
Os.11626.1.S1_at--13--10211Chr04:33489081..33489105 (25 bp)
TATTGCCCGTTTGACACTGCTAAAA
LOC_Os04g56530
Os.11626.1.S1_at--1049--7911Chr04:33488871..33488895 (25 bp)
GGTTGTCTATGAGCATCATCCTCGA
LOC_Os04g56530
Os.11626.1.S1_at--592--8231Chr04:33488776..33488800 (25 bp)
GGCAACGTGGCGGTCAACAGGTATT
LOC_Os04g56530
Os.11626.1.S1_at--1027--2951Chr04:33488742..33488766 (25 bp)
AATGGCCACCTCGTTGTTGAAAGCA
LOC_Os04g56530
Os.11626.1.S1_at--97--1191Chr04:33488703..33488727 (25 bp)
AGTACTGTGATTTGTCTCTCGGCCA
LOC_Os04g56530
Os.11626.1.S1_at--649--8431Chr04:33488683..33488707 (25 bp)
GGCCATTGTGTATTTTTCCTCTCAA
LOC_Os04g56530
Os.11626.1.S1_at--620--9711Chr04:33488662..33488686 (25 bp)
TCAAGTTGTATATGTTCGCCCCGGA
LOC_Os04g56530
Os.11626.1.S1_at--572--2891Chr04:33488536..33488560 (25 bp)
AAGGTTCAACGTTCGGGTGCTAGAT
LOC_Os04g56530
Os.11626.1.S1_at--829--10011Chr04:33488497..33488521 (25 bp)
TAGAGCCCTTCTTGGTCGTTTATAT
LOC_Os04g56530
Os.11626.1.S1_at--839--3131Chr04:33488379..33488403 (25 bp)
AATTTTGCTCTAGGTGTGCTGGCTA
LOC_Os04g56530
Target Sequence 
TTGACCACCGAGAAGCTATTGCCCGTTTGACACTGCTAAAATTAATAAAGGTTGTCTATGAGCATCATCCTCGACCAAAG
CAGCTCATAGTTGAGAATGATCTTCCTCAAAAGCTACAAAACCTGATCGAAGAACGAAGGGATGGGCAACGTGGCGGTCA
ACAGGTATTGGTNAAACAAATGGCCACCTCGTTGTTGAAAGCACTGCACATCAATACAGTACTGTGATTTGTCTCTCGGC
CATTGTGTATTTTTCCTCTCAAGTTGTATATGTTCGCCCCGGAGGAAAAGTTTTGTTTCTTCTTTCGCTGCCTCTTTTGT
ACCTGTGGTTTCCCTGGCGTGAGAGCCAGTCTGTTGCACGCCTGATCCCTCTTTTATCGGGAGAAAGGTTCAACGTTCGG
GTGCTAGATACAAAATGGGTTCCTAGAGCCCTTCTTGGTCGTTTATATTTAGTGTACTATTAGTGATAATTGGTGTAAAT
TAGTTTTCCCCAGTTTCCTTTTTAGAACTCATGTAGACTTTCTTGCATCTGATGTTAGTAAAATTTTGCTCTAGGTGTGC
TGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis