Browse Element(s) Details


Os.24672.1.S1_at

Description gb:AK103942.1
DB_XREF= gi:32989151
TID=Os.24672.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G11, full insert sequence.
FL= gb:AK070723.1 gb:AK103942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g565909/11ATP/GTP binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56530Os.11626.1.S1_at11/114+33488354..33500162MAP3K epsilon protein kinase, putative, expressed
LOC_Os04g56540OsAffx.26634.1.S1_s_at11/114+33500837..33504190expressed protein
LOC_Os04g56540Os.18047.1.S1_at7/114+33500837..33504190expressed protein
LOC_Os04g56550OsAffx.8091.2.S1_at11/114+33506025..33508152hypothetical protein
LOC_Os04g56550Os.21891.1.S1_at1/114+33506025..33508152hypothetical protein
LOC_Os04g56560Os.55838.1.S1_at11/114+33510736..33513430POT family protein, expressed
LOC_Os04g56570OsAffx.26635.1.S1_at11/114+33514532..33515250heavy metal-associated domain containing protein, expressed
LOC_Os04g56580Os.54256.1.S1_at11/114+33516069..33520302expressed protein
LOC_Os04g56580OsAffx.26636.1.S1_x_at11/114+33516069..33520302expressed protein
LOC_Os04g56590Os.24672.1.S1_at9/114+33521336..33527897ATP/GTP binding protein, putative, expressed
LOC_Os04g56600OsAffx.26637.1.S1_x_at11/114+33534933..33536230hypothetical protein
LOC_Os04g56600OsAffx.26637.2.S1_x_at2/114+33534933..33536230hypothetical protein
LOC_Os04g56610Os.11269.1.S1_at4/114+33536504..33536797expressed protein
LOC_Os04g56620OsAffx.14438.1.S1_x_at11/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.11269.1.S2_at10/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.57377.1.S1_at1/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56630Os.17581.1.A1_at10/114+33545898..33553313expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24672.1.S1_at--104--591Chr04:33521640..33521664 (25 bp)
ATCCAACTTGGAGAGCTGACACCGA
LOC_Os04g56590
Os.24672.1.S1_at--981--9271Chr04:33521591..33521615 (25 bp)
TCCTGGCGACATCTTCAAATTGGGT
LOC_Os04g56590
Os.24672.1.S1_at--765--2511Chr04:33521545..33521569 (25 bp)
AACTTGTTGCACCTTAACTCTGTAC
LOC_Os04g56590
Os.24672.1.S1_at--286--7011Chr04:33521524..33521548 (25 bp)
GTACTGCAGTTTTCGTCAGATCCTG
LOC_Os04g56590
Os.24672.1.S1_at--341--1291Chr04:33521507..33521531 (25 bp)
AGATCCTGCCATTCCTTAGAGTATC
LOC_Os04g56590
Os.24672.1.S1_at--270--10451Chr04:33521492..33521516 (25 bp)
TTAGAGTATCGCTTCCTTCGGCATT
LOC_Os04g56590
Os.24672.1.S1_at--1102--111Chr04:33521470..33521494 (25 bp)
ATTCTTTTTTGTTGTGCGTCGTGTA
LOC_Os04g56590
Os.24672.1.S1_at--15--7311Chr04:33521457..33521481 (25 bp)
GTGCGTCGTGTAACATTCTGGGAAT
LOC_Os04g56590
Os.24672.1.S1_at--870--2631Chr04:33521423..33521447 (25 bp)
AACCATCAGGCCGTACATCTTGTAA
LOC_Os04g56590
Os.24672.1.S1_at--727--7771Chr04:33521336..33521360 (25 bp)
GGTGCAAACCCCTTGATTTTGTCTT
NONE
Os.24672.1.S1_at--901--2551Chr04:33521311..33521335 (25 bp)
AACTGGTCTTGCTTGACATGCTATA
NONE
Target Sequence 
ATCCAACTTGGAGAGCTGACACCGAAATTTTGAAAGCCGTGGGAGAGATTCCTGGCGACATCTTCAAATTGGGTCTNTTA
TAGACCCGGGGTGAAAACTTGTTGCACCTTAACTCTGTACTGCAGTTTTCGTCAGATCCTGCCATTCCTTAGAGTATCGC
TTCCTTCGGCATTCTTTTTTGTTGTGCGTCGTGTAACATTCTGGGAATAGATTATGTAACCATCAGGCCGTACATCTTGT
AAGAGCAAAACAATTGGTTTAGGAAAAATGCTGATTCCTTTCACCGTCCTGTGAAGGTTGCTTGGGTGCAAACCCCTTGA
TTTTGTCTTAACTGGTCTTGCTTGACATGCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24672.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis