Browse Element(s) Details


Os.18047.1.S1_at

Description gb:AK120899.1
DB_XREF= gi:37990522
TID=Os.18047.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18047 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030J05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030J05, full insert sequence.
FL= gb:AK120899.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g565407/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56510Os.20414.1.S1_at11/114+33478649..33484540ABC1 family protein, putative, expressed
LOC_Os04g56520Os.5032.1.S1_at10/114+33485810..33488270Reversibly glycosylated polypeptide family protein, expressed
LOC_Os04g56530Os.11626.1.S1_at11/114+33488354..33500162MAP3K epsilon protein kinase, putative, expressed
LOC_Os04g56540OsAffx.26634.1.S1_s_at11/114+33500837..33504190expressed protein
LOC_Os04g56540Os.18047.1.S1_at7/114+33500837..33504190expressed protein
LOC_Os04g56550OsAffx.8091.2.S1_at11/114+33506025..33508152hypothetical protein
LOC_Os04g56550Os.21891.1.S1_at1/114+33506025..33508152hypothetical protein
LOC_Os04g56560Os.55838.1.S1_at11/114+33510736..33513430POT family protein, expressed
LOC_Os04g56570OsAffx.26635.1.S1_at11/114+33514532..33515250heavy metal-associated domain containing protein, expressed
LOC_Os04g56580Os.54256.1.S1_at11/114+33516069..33520302expressed protein
LOC_Os04g56580OsAffx.26636.1.S1_x_at11/114+33516069..33520302expressed protein
LOC_Os04g56590Os.24672.1.S1_at9/114+33521336..33527897ATP/GTP binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18047.1.S1_at--717--4071Chr04:33504256..33504280 (25 bp)
CGAGACGACGAGACCCAGCGAGCGA
NONE
Os.18047.1.S1_at--868--4171Chr04:33504243..33504267 (25 bp)
CCCAGCGAGCGATCCCGAGGGAAGA
NONE
Os.18047.1.S1_at--112--7951Chr04:33504190..33504214 (25 bp)
GGATCGGAGAGCTTTCCGCCGGCCA
NONE
Os.18047.1.S1_at--38--4091NONE
CGACCAACCTATTCCATTTGACCTT
NONE
Os.18047.1.S1_at--619--3931Chr04:33501977..33502001 (25 bp)
CGGCGAGTGAGCTGTGTTACAATTT
LOC_Os04g56540
Os.18047.1.S1_at--714--5331Chr04:33501952..33501976 (25 bp)
GAAGTCTGCTCATGCTGTATCACTA
LOC_Os04g56540
Os.18047.1.S1_at--1128--7931Chr04:33501918..33501942 (25 bp)
GGATTTCTATTCATTTTGGCACGAC
LOC_Os04g56540
Os.18047.1.S1_at--844--8511Chr04:33501867..33501891 (25 bp)
TGGAACACTTCCTCTAGACACTAGA
LOC_Os04g56540
Os.18047.1.S1_at--1143--5611Chr04:33501851..33501875 (25 bp)
GACACTAGAGGATGCCCACTGTGAT
LOC_Os04g56540
Os.18047.1.S1_at--870--9751Chr04:33501797..33501821 (25 bp)
TAATCGGATCAATGACCTTGTCCAT
LOC_Os04g56540
Os.18047.1.S1_at--333--651Chr04:33501786..33501810 (25 bp)
ATGACCTTGTCCATTCAAACTTCCA
LOC_Os04g56540
Target Sequence 
CGAGACGACGAGACCCAGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTT
TCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCT
GCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGG
GCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGGCGAGTGAGCTGTGTTACAATTTGAAGT
CTGCTCATGCTGTATCACTATTTAGTTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTT
TGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACNCAATAATCGGATC
AATGACCTTGTCCATTCAAACTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis