Browse Element(s) Details


OsAffx.26635.1.S1_at

Description tigr:9632.m05513
TID=OsAffx.26635.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT004711 At5g26685
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5657011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56530Os.11626.1.S1_at11/114+33488354..33500162MAP3K epsilon protein kinase, putative, expressed
LOC_Os04g56540OsAffx.26634.1.S1_s_at11/114+33500837..33504190expressed protein
LOC_Os04g56540Os.18047.1.S1_at7/114+33500837..33504190expressed protein
LOC_Os04g56550OsAffx.8091.2.S1_at11/114+33506025..33508152hypothetical protein
LOC_Os04g56550Os.21891.1.S1_at1/114+33506025..33508152hypothetical protein
LOC_Os04g56560Os.55838.1.S1_at11/114+33510736..33513430POT family protein, expressed
LOC_Os04g56570OsAffx.26635.1.S1_at11/114+33514532..33515250heavy metal-associated domain containing protein, expressed
LOC_Os04g56580Os.54256.1.S1_at11/114+33516069..33520302expressed protein
LOC_Os04g56580OsAffx.26636.1.S1_x_at11/114+33516069..33520302expressed protein
LOC_Os04g56590Os.24672.1.S1_at9/114+33521336..33527897ATP/GTP binding protein, putative, expressed
LOC_Os04g56600OsAffx.26637.1.S1_x_at11/114+33534933..33536230hypothetical protein
LOC_Os04g56600OsAffx.26637.2.S1_x_at2/114+33534933..33536230hypothetical protein
LOC_Os04g56610Os.11269.1.S1_at4/114+33536504..33536797expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26635.1.S1_at--676--1751Chr04:33515196..33515220 (25 bp)
ACCTCCTGCGACAAATGCAAGCGCA
LOC_Os04g56570
OsAffx.26635.1.S1_at--668--5151Chr04:33515180..33515204 (25 bp)
GCAAGCGCAAGATCCTGCAAACCGT
LOC_Os04g56570
OsAffx.26635.1.S1_at--771--5171Chr04:33515174..33515198 (25 bp)
GCAAGATCCTGCAAACCGTCTCCGG
LOC_Os04g56570
OsAffx.26635.1.S1_at--1038--9491Chr04:33514905..33515180 (25 bp)
TCTCCGGCCTCCAAGGTGTTGACAA
LOC_Os04g56570
OsAffx.26635.1.S1_at--121--7751Chr04:33514891..33514915 (25 bp)
GGTGTTGACAAGATCGATATCGACT
LOC_Os04g56570
OsAffx.26635.1.S1_at--163--451Chr04:33514879..33514903 (25 bp)
ATCGATATCGACTCGGAGAAGGGAA
LOC_Os04g56570
OsAffx.26635.1.S1_at--1079--8331Chr04:33514835..33514859 (25 bp)
GGCGGACCCGGTGGACGTGATCGAG
LOC_Os04g56570
OsAffx.26635.1.S1_at--550--5331Chr04:33514783..33514807 (25 bp)
GAAGTCGTGACCATCGGGCCGCCGC
LOC_Os04g56570
OsAffx.26635.1.S1_at--419--7551Chr04:33514583..33514607 (25 bp)
GTGGCCATCCTACGAGTACGACCAG
LOC_Os04g56570
OsAffx.26635.1.S1_at--528--1151Chr04:33514569..33514593 (25 bp)
AGTACGACCAGAGCGTAGTCTACCA
LOC_Os04g56570
OsAffx.26635.1.S1_at--475--4352Chr04:33514562..33514586 (25 bp)
CCAGAGCGTAGTCTACCACCAGCAG
LOC_Os04g56570
Target Sequence 
ACCTCCTGCGACAAATGCAAGCGCAAGATCCTGCAAACCGTCTCCGGCCTCCAAGGTGTTGACAAGATCGATATCGACTC
GGAGAAGGGAACGATGACGGTGACCGCTAGGGCGGACCCGGTGGACGTGATCGAGCGGACGAGGAAGGCCGGGAAGCGCG
CGGAAGTCGTGACCATCGGGCCGCCGCCGGCGTCGTCGTCGTCGTCGTCGTCCAACCCGTCGACGGAGCAGCAGCAGATC
AAGAAGCAGGCGCCGGCGGCCGAGGAGAAGGTGTACACGGCGGCCGCGGAGAAGAGGGCGCCTGAGCCGCCGGCCACCGT
GTACGTCCACTACATCCCCGCCTCGACGTGGTCGGCTCCGGCGTGGCCATCCTACGAGTACGACCAGAGCGTAGTCTACC
ACCAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26635.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis