Browse Element(s) Details


Os.54256.1.S1_at

Description gb:AK102842.1
DB_XREF= gi:32988051
TID=Os.54256.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033109O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033109O19, full insert sequence.
FL= gb:AK102842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5658011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56530Os.11626.1.S1_at11/114+33488354..33500162MAP3K epsilon protein kinase, putative, expressed
LOC_Os04g56540OsAffx.26634.1.S1_s_at11/114+33500837..33504190expressed protein
LOC_Os04g56540Os.18047.1.S1_at7/114+33500837..33504190expressed protein
LOC_Os04g56550OsAffx.8091.2.S1_at11/114+33506025..33508152hypothetical protein
LOC_Os04g56550Os.21891.1.S1_at1/114+33506025..33508152hypothetical protein
LOC_Os04g56560Os.55838.1.S1_at11/114+33510736..33513430POT family protein, expressed
LOC_Os04g56570OsAffx.26635.1.S1_at11/114+33514532..33515250heavy metal-associated domain containing protein, expressed
LOC_Os04g56580Os.54256.1.S1_at11/114+33516069..33520302expressed protein
LOC_Os04g56580OsAffx.26636.1.S1_x_at11/114+33516069..33520302expressed protein
LOC_Os04g56590Os.24672.1.S1_at9/114+33521336..33527897ATP/GTP binding protein, putative, expressed
LOC_Os04g56600OsAffx.26637.1.S1_x_at11/114+33534933..33536230hypothetical protein
LOC_Os04g56600OsAffx.26637.2.S1_x_at2/114+33534933..33536230hypothetical protein
LOC_Os04g56610Os.11269.1.S1_at4/114+33536504..33536797expressed protein
LOC_Os04g56620OsAffx.14438.1.S1_x_at11/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.11269.1.S2_at10/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.57377.1.S1_at1/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0030643biological_processphosphate ion homeostasis
GO:0035299molecular_functioninositol pentakisphosphate 2-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54256.1.S1_at--540--1271Chr04:33516429..33516453 (25 bp)
AGATCCACGTGATCCTCCAAAGGGA
LOC_Os04g56580
Os.54256.1.S1_at--1023--7651Chr04:33516408..33516432 (25 bp)
GGGATGTGGCCCTAGGTGACACAAA
LOC_Os04g56580
Os.54256.1.S1_at--138--7371Chr04:33516393..33516417 (25 bp)
GTGACACAAAGGTTCAGCTCCAAAG
LOC_Os04g56580
Os.54256.1.S1_at--105--2911Chr04:33516371..33516395 (25 bp)
AAGGTTCAGCTCCAACATTGACGAC
LOC_Os04g56580
Os.54256.1.S1_at--595--7431Chr04:33516294..33516318 (25 bp)
GTGTTTCTACAAGTGTGCATGTCCA
LOC_Os04g56580
Os.54256.1.S1_at--846--4991Chr04:33516278..33516302 (25 bp)
GCATGTCCAATGTGCAGGTTCTCCT
LOC_Os04g56580
Os.54256.1.S1_at--171--7031Chr04:33516212..33516236 (25 bp)
GTACATCCTGTATACCGTGTGGTTT
LOC_Os04g56580
Os.54256.1.S1_at--237--7871Chr04:33516192..33516216 (25 bp)
GGTTTGCCTCAGCAGTAGGCCGAAT
LOC_Os04g56580
Os.54256.1.S1_at--22--2391Chr04:33516136..33516160 (25 bp)
AAACTGTATACTGAGGCATCCACGT
LOC_Os04g56580
Os.54256.1.S1_at--124--6211Chr04:33516124..33516148 (25 bp)
GAGGCATCCACGTTTACCTTGGAAA
LOC_Os04g56580
Os.54256.1.S1_at--1116--311Chr04:33516093..33516117 (25 bp)
ATAAATTCCCGTATACTCAGCTTGC
LOC_Os04g56580
Target Sequence 
AGATCCACGTGATCCTCCAAAGGGATGTGGCCCTAGGTGACACAAAGGTTCAGCTCCAAAGGTTCAGCTCCAACATTGAC
GACCTTGAAATATAAAGGGCATAGGACAAGTGTCTGTTGTATCTTGGTGATTGTTGTGTTTCTACAAGTGTGCATGTCCA
ATGTGCAGGTTCTCCTCCCTTCTAGGGAAAACGTGTAAGAGAGTGGTAGTTGTTGTAGTACATCCTGTATACCGTGTGGT
TTGCCTCAGCAGTAGGCCGAATTTTCAGTAGACAAACATTAAGAAGAGTTAATAAACTGTATACTGAGGCATCCACGTTT
ACCTTGGAAATCTATGATAAATTCCCGTATACTCAGCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis