Browse Element(s) Details


OsAffx.14438.1.S1_x_at

Description tigr:9632.m05517
TID=OsAffx.14438.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to molybdopterin biosynthesis cnx1 protein (molybdenum cofactor biosynthesis enzyme cnx1). (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5662011/11Molybdopterin biosynthesis CNX1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56580Os.54256.1.S1_at11/114+33516069..33520302expressed protein
LOC_Os04g56580OsAffx.26636.1.S1_x_at11/114+33516069..33520302expressed protein
LOC_Os04g56590Os.24672.1.S1_at9/114+33521336..33527897ATP/GTP binding protein, putative, expressed
LOC_Os04g56600OsAffx.26637.1.S1_x_at11/114+33534933..33536230hypothetical protein
LOC_Os04g56600OsAffx.26637.2.S1_x_at2/114+33534933..33536230hypothetical protein
LOC_Os04g56610Os.11269.1.S1_at4/114+33536504..33536797expressed protein
LOC_Os04g56620OsAffx.14438.1.S1_x_at11/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.11269.1.S2_at10/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.57377.1.S1_at1/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56630Os.17581.1.A1_at10/114+33545898..33553313expressed protein
LOC_Os04g56640Os.39284.1.S1_s_at11/114+33555343..33558232MED7 protein, expressed
LOC_Os04g56654Os.5973.1.S1_at11/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56654OsAffx.26639.1.S1_at10/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56670Os.15267.1.S1_at11/114+33565295..33567400U3 small nucleolar ribonucleoprotein protein IMP3, putative, expressed
LOC_Os04g56680Os.55358.1.S1_at11/114+33570364..33571315Auxin responsive protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006777biological_processMo-molybdopterin cofactor biosynthesis
GO:0009734biological_processauxin mediated signaling pathway
GO:0030151molecular_functionmolybdenum ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14438.1.S1_x_at--717--9211Chr04:33543762..33543786 (25 bp)
TCCACAGATTTGTCTCAGGTTCCAG
LOC_Os04g56620
OsAffx.14438.1.S1_x_at--490--1011Chr04:33543778..33543802 (25 bp)
AGGTTCCAGCCTCACAGAATACTGA
LOC_Os04g56620
OsAffx.14438.1.S1_x_at--29--5891Chr04:33543827..33543851 (25 bp)
GAGCGACACTGTTTCATTGGGTGCA
LOC_Os04g56620
OsAffx.14438.1.S1_x_at--704--7511Chr04:33544327..33544351 (25 bp)
GTGGAGCGACTGTTGTTGCTACTGC
LOC_Os04g56620
OsAffx.14438.1.S1_x_at--427--10731Chr04:33544342..33544366 (25 bp)
TTGCTACTGCTGTTGTTCCAGACGA
LOC_Os04g56620
OsAffx.14438.1.S1_x_at--975--2071Chr04:33544405..33544429 (25 bp)
ACATTGATCGTGTCAGCCTCATCTT
LOC_Os04g56620
OsAffx.14438.1.S1_x_at--363--1691Chr04:33544419..33544440 (22 bp)
AGCCTCATCTTGACACTAGGTGGTA
LOC_Os04g56620
OsAffx.14438.1.S1_x_at--161--7511Chr04:33544533..33544557 (25 bp)
GTGGTACTGGTTTCACACCTAGAGA
LOC_Os04g56620
OsAffx.14438.1.S1_x_at--5--5991Chr04:33544589..33544613 (25 bp)
GAGAAAGAAGCACCTGGCCTCACAT
LOC_Os04g56620
OsAffx.14438.1.S1_x_at--855--8451Chr04:33544603..33544627 (25 bp)
TGGCCTCACATATGTCATGCTTCAG
LOC_Os04g56620
OsAffx.14438.1.S1_x_at--532--8011Chr04:33545030..33545054 (25 bp)
GGAGGCGCTTCTTCCAGCACTGAAA
LOC_Os04g56620
Target Sequence 
TCCACAGATTTGTCTCAGGTTCCAGCCTCACAGAATACTGAAGTTAAAGTAGCAATTCTGACAGTGAGCGACACTGTTTC
ATTGGGTGCAGGCCCTGACAGGAGTGGGCCAAGGGCAATATCTGTAGTGAATTCTTCATCAGAGAAATTGGGTGGAGCGA
CTGTTGTTGCTACTGCTGTTGTTCCAGACGATGTGGAAAAAATCAAGAACATTTTGGTGAAGTGGAGTGACATTGATCGT
GTCAGCCTCATCTTGACACTAGGTGGTACTGGTTTCACACCTAGAGATGTCACACCAGAGGCAACAAAATCTGTCATAGA
GAAAGAAGCACCTGGCCTCACATATGTCATGCTTCAGGAAAGTTTGAAGATCATCAACATGCCCGGGAACCCGAACGCCG
TTGCGGAGTGCATGGAGGCGCTTCTTCCAGCACTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14438.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis