Browse Element(s) Details


Os.17581.1.A1_at

Description gb:AK066532.1
DB_XREF= gi:32976550
TID=Os.17581.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17581 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073I20, full insert sequence.
FL= gb:AK066532.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5663010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56590Os.24672.1.S1_at9/114+33521336..33527897ATP/GTP binding protein, putative, expressed
LOC_Os04g56600OsAffx.26637.1.S1_x_at11/114+33534933..33536230hypothetical protein
LOC_Os04g56600OsAffx.26637.2.S1_x_at2/114+33534933..33536230hypothetical protein
LOC_Os04g56610Os.11269.1.S1_at4/114+33536504..33536797expressed protein
LOC_Os04g56620OsAffx.14438.1.S1_x_at11/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.11269.1.S2_at10/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.57377.1.S1_at1/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56630Os.17581.1.A1_at10/114+33545898..33553313expressed protein
LOC_Os04g56640Os.39284.1.S1_s_at11/114+33555343..33558232MED7 protein, expressed
LOC_Os04g56654Os.5973.1.S1_at11/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56654OsAffx.26639.1.S1_at10/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56670Os.15267.1.S1_at11/114+33565295..33567400U3 small nucleolar ribonucleoprotein protein IMP3, putative, expressed
LOC_Os04g56680Os.55358.1.S1_at11/114+33570364..33571315Auxin responsive protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17581.1.A1_at--503--5491Chr04:33547236..33547256 (21 bp)
GAACAGACGAGTTTCGCGGTCTCCA
LOC_Os04g56630
Os.17581.1.A1_at--670--7811Chr04:33547219..33547243 (25 bp)
GGTCTCCACATAGCAAGCATTCTCA
LOC_Os04g56630
Os.17581.1.A1_at--796--91Chr04:33547186..33547210 (25 bp)
ATTCGCCTTATTCATCTGCGGAAAG
LOC_Os04g56630
Os.17581.1.A1_at--641--791Chr04:33546252..33546276 (25 bp)
ATGTGTGGCATATCGCTGCATCTTC
LOC_Os04g56630
Os.17581.1.A1_at--133--2611Chr04:33546211..33546235 (25 bp)
AACGCATTCCCACGGTAGCAAGATG
LOC_Os04g56630
Os.17581.1.A1_at--583--6351Chr04:33546190..33546214 (25 bp)
GATGCCCGCGGATCACCAGTGTAGA
LOC_Os04g56630
Os.17581.1.A1_at--1009--8011Chr04:33546159..33546183 (25 bp)
GGAGGTTTGCCCATACAGAGGATAT
LOC_Os04g56630
Os.17581.1.A1_at--431--10211Chr04:33546089..33546113 (25 bp)
TATTTTGTAGGCCTAGCGACCCACG
LOC_Os04g56630
Os.17581.1.A1_at--867--731Chr04:33546054..33546078 (25 bp)
ATGTACCACCTTTCGATTTCATGTA
LOC_Os04g56630
Os.17581.1.A1_at--702--1811Chr04:33546002..33546026 (25 bp)
ACGCCAACGCCCAGTAGGTGTGTAC
LOC_Os04g56630
Os.17581.1.A1_at--1116--6871Chr04:33545796..33545933 (25 bp)
GTATTATTCTATTTGGCTCCCCTAT
NONE
Target Sequence 
GAACAGACGAGTTTCGCGGTCTCCACATAGCAAGCATTCTCACCGCAGGCATTCGCCTTATTCATCTGCGGAAAGGAAGA
AGCGTTCCAGATCCAGAACTCCAGTCAAAAGAAGATAGAAGATACTTTTGATTTCAAGANGCCNCGANCANNNCCTTGTG
AGGCGATGTGTGGCATATCGCTGCATCTTCTACTGATTCATTGAACAACGCATTCCCACGGTAGCAAGATGCCCGCGGAT
CACCAGTGTAGATAAGCTGGAGGTTTGCCCATACAGAGGATATTAAATCTTCTGTGCTAGCAGCCTAGCAGAGAGCAATG
TACTTAATTATTTTGTAGGCCTAGCGACCCACGCAAATATGACATGTACCACCTTTCGATTTCATGTATTCCATCTTGAT
TGTGGAAAATTGGCAACGCCAACGCCCAGTAGGTGTGTACTGGCTTGCGATTATTTTTGTAGTTTTGAAGATTACTGTTA
TNGTNTTTTTTCTTGAAACGCAGATTGTTCGTATTATTCTATTTGGCTCCCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17581.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis