Browse Element(s) Details


OsAffx.26639.1.S1_at

Description tigr:9632.m05523
TID=OsAffx.26639.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5665410/11Mov34/MPN/PAD-1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56600OsAffx.26637.1.S1_x_at11/114+33534933..33536230hypothetical protein
LOC_Os04g56600OsAffx.26637.2.S1_x_at2/114+33534933..33536230hypothetical protein
LOC_Os04g56610Os.11269.1.S1_at4/114+33536504..33536797expressed protein
LOC_Os04g56620OsAffx.14438.1.S1_x_at11/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.11269.1.S2_at10/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.57377.1.S1_at1/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56630Os.17581.1.A1_at10/114+33545898..33553313expressed protein
LOC_Os04g56640Os.39284.1.S1_s_at11/114+33555343..33558232MED7 protein, expressed
LOC_Os04g56654Os.5973.1.S1_at11/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56654OsAffx.26639.1.S1_at10/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56670Os.15267.1.S1_at11/114+33565295..33567400U3 small nucleolar ribonucleoprotein protein IMP3, putative, expressed
LOC_Os04g56680Os.55358.1.S1_at11/114+33570364..33571315Auxin responsive protein, expressed
LOC_Os04g56690Os.55720.1.S1_at11/114+33585356..33586405Auxin responsive protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26639.1.S1_at--1045--7511Chr04:33563404..33563428 (25 bp)
GTGGAAGCTGGCGAACTCACCGGCT
LOC_Os04g56654
OsAffx.26639.1.S1_at--441--8171Chr04:33563574..33563598 (25 bp)
GGAATTGGCCAAGATCCGGTACGAT
LOC_Os04g56654
OsAffx.26639.1.S1_at--727--7291Chr04:33563601..33563625 (25 bp)
GTGCCCGCGCCACATGAAGGATAAG
LOC_Os04g56654
OsAffx.26639.1.S1_at--1153--7931Chr04:33563636..33563660 (25 bp)
GGATATACTTTCTGCTCGCTAAGAG
LOC_Os04g56654
OsAffx.26639.1.S1_at--679--6071NONE
GAGTTACACTTCTCCGTATGAGCTA
NONE
OsAffx.26639.1.S1_at--373--1071Chr04:33564695..33564719 (25 bp)
AGGGATTCTCAAACGTTACCAGGTG
LOC_Os04g56654
OsAffx.26639.1.S1_at--1015--8071Chr04:33564803..33564827 (25 bp)
GGAGCTATCTATTCTTTCTTTGGGT
LOC_Os04g56654
OsAffx.26639.1.S1_at--88--10251Chr04:33564821..33564845 (25 bp)
TTTGGGTCTCATGCTTCCAGTTGAA
LOC_Os04g56654
OsAffx.26639.1.S1_at--415--7051Chr04:33564871..33564895 (25 bp)
GTAACACCTATGCATGGCCTGAATG
LOC_Os04g56654
OsAffx.26639.1.S1_at--211--9011Chr04:33564890..33564914 (25 bp)
TGAATGTGCATGCAGCTTCTTGCTG
LOC_Os04g56654
OsAffx.26639.1.S1_at--1054--8271Chr04:33564918..33564942 (25 bp)
GGCATAACGTGCACCATTGTAAATT
LOC_Os04g56654
Target Sequence 
GTGGAAGCTGGCGAACTCACCGGCTGGCAGGAGCGGCACGCCGTGCTCGTGCTCTCCAAAGCCAAGGAATTGGCCAAGAT
CCGGTACGATCTGTGCCCGCGCCACATGAAGGATAAGCAGTTCTGGAGGATATACTTTCTGCTCGCTAAGAGTTACACTT
CTCCGTATGAGCTACGAGCCATACAAAAGGAGAAGGTAAGAAGGATGGAGACAGAAAATGGGAAGGCAAAAGATGTGACT
ACTGTTGAGGTCGAGATGCAAGAATCAAAATGCAGTAGGGATTCTCAAACGTTACCAGGTGATGAAGAATCTCAAGATTC
ATAGTTAGTGTTGTGAACTGAAATTTAGGACATGATGGTAGTATAAAATCCATTTTGTGTGTGAGGAGCTATCTATTCTT
TCTTTGGGTCTCATGCTTCCAGTTGAATGTCGGCTTGAAAACTGTATTAGAAGTAACACCTATGCATGGCCTGAATGTGC
ATGCAGCTTCTTGCTGAATGGCATAACGTGCACCATTGTAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis