Browse Element(s) Details


Os.5973.1.S1_at

Description gb:AK103551.1
DB_XREF= gi:32988760
TID=Os.5973.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.5973 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsRPN8 mRNA for 26S proteasome regulatory particle non-ATPase subunit8, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132F12, full insert sequence.
FL= gb:AK061835.1 gb:AK103551.1 gb:AK104076.1 gb:AB037150.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5665411/11Mov34/MPN/PAD-1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56600OsAffx.26637.1.S1_x_at11/114+33534933..33536230hypothetical protein
LOC_Os04g56600OsAffx.26637.2.S1_x_at2/114+33534933..33536230hypothetical protein
LOC_Os04g56610Os.11269.1.S1_at4/114+33536504..33536797expressed protein
LOC_Os04g56620OsAffx.14438.1.S1_x_at11/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.11269.1.S2_at10/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.57377.1.S1_at1/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56630Os.17581.1.A1_at10/114+33545898..33553313expressed protein
LOC_Os04g56640Os.39284.1.S1_s_at11/114+33555343..33558232MED7 protein, expressed
LOC_Os04g56654Os.5973.1.S1_at11/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56654OsAffx.26639.1.S1_at10/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56670Os.15267.1.S1_at11/114+33565295..33567400U3 small nucleolar ribonucleoprotein protein IMP3, putative, expressed
LOC_Os04g56680Os.55358.1.S1_at11/114+33570364..33571315Auxin responsive protein, expressed
LOC_Os04g56690Os.55720.1.S1_at11/114+33585356..33586405Auxin responsive protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5973.1.S1_at--237--6052Chr04:33560758..33560779 (22 bp)
GAGATTTTGTACCACTTGCAGGATG
LOC_Os04g56654
Os.5973.1.S1_at--893--991Chr04:33561357..33561381 (25 bp)
AGGATGTGTTTAATCTGCTCCCCAA
LOC_Os04g56654
Os.5973.1.S1_at--100--251Chr04:33561543..33561567 (25 bp)
ATATACTTGTCTTCTCTTATCCGGA
LOC_Os04g56654
Os.5973.1.S1_at--140--7451Chr04:33561568..33561592 (25 bp)
GTGTCATCGCACTCCATAACTTGAT
LOC_Os04g56654
Os.5973.1.S1_at--286--311Chr04:33561746..33561770 (25 bp)
ATACCTAGTGCTGCTGGGAGCTGAA
LOC_Os04g56654
Os.5973.1.S1_at--1081--5891Chr04:33561763..33561787 (25 bp)
GAGCTGAATGTGCTTTATTTGCCTT
LOC_Os04g56654
Os.5973.1.S1_at--1002--10271Chr04:33561780..33561804 (25 bp)
TTTGCCTTAGATTTTGGACCCAGTG
LOC_Os04g56654
Os.5973.1.S1_at--379--6231Chr04:33561835..33561859 (25 bp)
GATGGCGTTTGAACCAATTGTCTTT
LOC_Os04g56654
Os.5973.1.S1_at--230--8931Chr04:33561859..33561883 (25 bp)
TGACCTTGGTTTTACACTTTCGATG
LOC_Os04g56654
Os.5973.1.S1_at--378--5911Chr04:33561929..33561953 (25 bp)
GAGCTTAGGTCATACTACCTCTTGA
LOC_Os04g56654
Os.5973.1.S1_at--900--9971Chr04:33561944..33561968 (25 bp)
TACCTCTTGAGCTTTCATCTTGATC
LOC_Os04g56654
Target Sequence 
GAGATTTTGTACCACTTGCAGGATGTGTTTAATCTGCTCCCCAATCTCAATGTAAACGAGCTTATTAAAGCCTTTGCAGT
TAAAACAAACGATATGATGTTGGTCATATACTTGTCTTCTCTTATCCGGAGTGTCATCGCACTCCATAACTTGATCAATA
ACAAGATGCTAAACAAGGAGCATGAGAAAGCCGAGGATTCGAAGCCAACCGCCATACCTAGTGCTGCTGGGAGCTGAATG
TGCTTTATTTGCCTTAGATTTTGGACCCAGTGGAAGCCAAAAGAATTGTGACATGTTAGCATGATGGCGTTTGAACCAAT
TGTCTTTGACCTTGGTTTTACACTTTCGATGTTTATTTCATGTACGATAAGGTCAACGGCAAACTTTACATTCTGTGAGC
TTAGGTCATACTACCTCTTGAGCTTTCATCTTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis