Browse Element(s) Details


Os.11269.1.S1_at

Description gb:AK105225.1
DB_XREF= gi:32990434
TID=Os.11269.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-G06, full insert sequence.
FL= gb:AK070456.1 gb:AK105225.1 gb:AK058715.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g566104/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56560Os.55838.1.S1_at11/114+33510736..33513430POT family protein, expressed
LOC_Os04g56570OsAffx.26635.1.S1_at11/114+33514532..33515250heavy metal-associated domain containing protein, expressed
LOC_Os04g56580Os.54256.1.S1_at11/114+33516069..33520302expressed protein
LOC_Os04g56580OsAffx.26636.1.S1_x_at11/114+33516069..33520302expressed protein
LOC_Os04g56590Os.24672.1.S1_at9/114+33521336..33527897ATP/GTP binding protein, putative, expressed
LOC_Os04g56600OsAffx.26637.1.S1_x_at11/114+33534933..33536230hypothetical protein
LOC_Os04g56600OsAffx.26637.2.S1_x_at2/114+33534933..33536230hypothetical protein
LOC_Os04g56610Os.11269.1.S1_at4/114+33536504..33536797expressed protein
LOC_Os04g56620OsAffx.14438.1.S1_x_at11/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.11269.1.S2_at10/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56620Os.57377.1.S1_at1/114+33542302..33545429Molybdopterin biosynthesis CNX1 protein, putative, expressed
LOC_Os04g56630Os.17581.1.A1_at10/114+33545898..33553313expressed protein
LOC_Os04g56640Os.39284.1.S1_s_at11/114+33555343..33558232MED7 protein, expressed
LOC_Os04g56654Os.5973.1.S1_at11/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed
LOC_Os04g56654OsAffx.26639.1.S1_at10/114+33558605..33564977Mov34/MPN/PAD-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11269.1.S1_at--265--951Chr04:33536447..33536471 (25 bp)
AGGAAATCAGCCTGAACGCCGGCGG
NONE
Os.11269.1.S1_at--67--9111Chr04:33536494..33536518 (25 bp)
TGCTCCTCCGATGGTGACCAGATGG
NONE
Os.11269.1.S1_at--112--8111Chr04:33536556..33536576 (21 bp)
GGACCCTGGGAACCGCTGGAATTAT
LOC_Os04g56610
Os.11269.1.S1_at--22--10111Chr04:33536671..33536695 (25 bp)
TATGATTACCAATGTCGTCCGGACG
LOC_Os04g56610
Os.11269.1.S1_at--195--6511Chr04:33536705..33536729 (25 bp)
GATATGCAGAAGATCCTCCAGGAGG
LOC_Os04g56610
Os.11269.1.S1_at--536--3811Chr04:33536764..33536788 (25 bp)
CTCCGGCGAGCGTGTCCTGAAAGAC
LOC_Os04g56610
Os.11269.1.S1_at--1125--4211Chr04:33539052..33539076 (25 bp)
CCGCTGTTGTGCCAAGCTGAGTTAG
NONE
Os.11269.1.S1_at--800--7851Chr04:33539076..33539100 (25 bp)
GGTATTGTTTATCTGGTTCGTCTTA
NONE
Os.11269.1.S1_at--996--2411Chr04:33539116..33539140 (25 bp)
AAAACAGCTACTTGCTTGAGCGGAA
NONE
Os.11269.1.S1_at--1138--2251Chr04:33539161..33539185 (25 bp)
AAATACTGGGTCGTCTACCATCTCA
NONE
Os.11269.1.S1_at--970--9351Chr04:33539243..33539267 (25 bp)
TCGAACATCTTCAGGCATAGCTATA
NONE
Target Sequence 
AGGAAATCAGCCTGAACGCCGGCGGCGCTCCCGCCGCGCTCGAGCTCTGCTCCTCCGATGGTGACCAGATGGAGCGAGAA
GGGCCCCGGCCTCAAGATCCTGTGGATCTGGACCCTGGGAACCGCTGGAATTATGATTACCAATGTCGTCCGGACGCGCG
TCAATGATATGCAGAAGATCCTCCAGGAGGAAGACGAAGCAGCAGCAGCCGCCGCCCCCATGGCCTCCGGCGAGCGTGTC
CTGAAAGACGATGAGTAGAACAGAACGTCTCTACTTATCAAAATTCCCTGAACCCCGCTGTTGTGCCAAGCTGAGTTAGG
TATTGTTTATCTGGTTCGTCTTAGTGGATTTTACTGGTAAAACAGCTACTTGCTTGAGCGGAAGTATGGAATTACTTGAT
TCAAAATACTGGGTCGTCTACCATCTCATTTANAACTTTTTAGATCTTCATACAGTGAATTTTCTGTTGGCTAGAAAGAA
GGTGATCGAACATCTTCAGGCATAGCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis