Browse Element(s) Details


OsAffx.8091.2.S1_at

Description tigr:9632.m05511
TID=OsAffx.8091.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5655011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56510Os.20414.1.S1_at11/114+33478649..33484540ABC1 family protein, putative, expressed
LOC_Os04g56520Os.5032.1.S1_at10/114+33485810..33488270Reversibly glycosylated polypeptide family protein, expressed
LOC_Os04g56530Os.11626.1.S1_at11/114+33488354..33500162MAP3K epsilon protein kinase, putative, expressed
LOC_Os04g56540OsAffx.26634.1.S1_s_at11/114+33500837..33504190expressed protein
LOC_Os04g56540Os.18047.1.S1_at7/114+33500837..33504190expressed protein
LOC_Os04g56550OsAffx.8091.2.S1_at11/114+33506025..33508152hypothetical protein
LOC_Os04g56550Os.21891.1.S1_at1/114+33506025..33508152hypothetical protein
LOC_Os04g56560Os.55838.1.S1_at11/114+33510736..33513430POT family protein, expressed
LOC_Os04g56570OsAffx.26635.1.S1_at11/114+33514532..33515250heavy metal-associated domain containing protein, expressed
LOC_Os04g56580Os.54256.1.S1_at11/114+33516069..33520302expressed protein
LOC_Os04g56580OsAffx.26636.1.S1_x_at11/114+33516069..33520302expressed protein
LOC_Os04g56590Os.24672.1.S1_at9/114+33521336..33527897ATP/GTP binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8091.2.S1_at--505--4411Chr04:33506243..33506267 (25 bp)
GCCTTAACAACCGAAGACGATGCAG
LOC_Os04g56550
OsAffx.8091.2.S1_at--607--1651Chr04:33506278..33506302 (25 bp)
AGCGCCGGATTCTGATCGTGATCGT
LOC_Os04g56550
OsAffx.8091.2.S1_at--331--511Chr04:33506298..33506322 (25 bp)
ATCGTGCCGGAGGTCATCGCAAGTA
LOC_Os04g56550
OsAffx.8091.2.S1_at--120--6871Chr04:33506320..33506344 (25 bp)
GTATATGGCGTTCGAGGATTCCGTC
LOC_Os04g56550
OsAffx.8091.2.S1_at--379--1011Chr04:33506334..33506358 (25 bp)
AGGATTCCGTCGTCTTCGTAGGCAC
LOC_Os04g56550
OsAffx.8091.2.S1_at--906--7651Chr04:33506372..33506396 (25 bp)
GGGATCGTGTGTGCGCTCCTCAGCA
LOC_Os04g56550
OsAffx.8091.2.S1_at--838--9331Chr04:33506402..33506426 (25 bp)
TCGCCCGGCGTATCATGGGAGTACA
LOC_Os04g56550
OsAffx.8091.2.S1_at--272--1171Chr04:33506421..33506445 (25 bp)
AGTACAGGGCCTTCGGTGTGCAGCT
LOC_Os04g56550
OsAffx.8091.2.S1_at--233--4871Chr04:33507067..33507091 (25 bp)
GCTAGAACATTCAACTCCACAAAAT
LOC_Os04g56550
OsAffx.8091.2.S1_at--158--5231Chr04:33507401..33507425 (25 bp)
GAATATTATTCTGACCGTTAAGCAT
LOC_Os04g56550
OsAffx.8091.2.S1_at--358--8771Chr04:33507442..33507890 (25 bp)
TGTTACTTTCCCCATTAGGGAGGCA
LOC_Os04g56550
Target Sequence 
GCCTTAACAACCGAAGACGATGCAGCGGCGGCGGCAGCGCCGGATTCTGATCGTGATCGTGCCGGAGGTCATCGCAAGTA
TATGGCGTTCGAGGATTCCGTCGTCTTCGTAGGCACCACGCTCTCCCAGGGGATCGTGTGTGCGCTCCTCAGCATCCTCT
CGCCCGGCGTATCATGGGAGTACAGGGCCTTCGGTGTGCAGCTTTCGGGGATTTTCTTGATTTATAGGTTTGTGGAGCTA
GAACATTCAACTCCACAAAATCTCATAGAGTTGAATATTATTCTGACCGTTAAGCATAAGATCGAGCTTAATTTGTTACT
TTCCCCATTAGGGAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8091.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis