Browse Element(s) Details


Os.18862.1.S1_at

Description gb:AY341850.1
DB_XREF= gi:33519187
TID=Os.18862.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18862 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) WRKY9 mRNA, complete cds.
PROD=WRKY9
FL= gb:AY341850.1 gb:AK070537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3948011/11SUSIBA2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39450OsAffx.16638.1.S1_at11/117+23631179..23631717hypothetical protein
LOC_Os07g39460OsAffx.5577.1.S1_at11/117+23632184..23641506RNA recognition motif family protein, expressed
LOC_Os07g39460OsAffx.32220.1.A1_s_at1/117+23632184..23641506RNA recognition motif family protein, expressed
LOC_Os07g39470Os.10061.1.S1_at11/117+23648831..23652377Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os07g39480Os.18862.1.S1_at11/117+23652442..23657931SUSIBA2, putative, expressed
LOC_Os07g39490NANA7+23663330..23664122hypothetical protein
LOC_Os07g39500OsAffx.29384.3.S1_x_at10/117+23666427..23668732hypothetical protein
LOC_Os07g39510OsAffx.16641.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.7129.1.S1_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.27881.1.S1_s_at11/117+23671365..23674718expressed protein
LOC_Os07g39510Os.1880.1.A1_at11/117+23671365..23674718expressed protein
LOC_Os07g39520Os.16320.1.S1_at11/117+23676169..23678225Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18862.1.S1_at--556--5331Chr07:23653302..23653326 (25 bp)
GAAGTCCCTGCGTCGAGGAATGCGA
LOC_Os07g39480
Os.18862.1.S1_at--387--5271Chr07:23653285..23653309 (25 bp)
GAATGCGAGCCATGAGATGTCCACT
LOC_Os07g39480
Os.18862.1.S1_at--277--8991Chr07:23653253..23653277 (25 bp)
TGAAGCCTGTTGTCCATCCAATTAA
LOC_Os07g39480
Os.18862.1.S1_at--782--5571Chr07:23653149..23653173 (25 bp)
GAAAGTGACACCATCAGCCTTGATC
LOC_Os07g39480
Os.18862.1.S1_at--780--7751Chr07:23653122..23653146 (25 bp)
GGTGTTGGAATCAGCCCGAACCACA
LOC_Os07g39480
Os.18862.1.S1_at--400--71Chr07:23653081..23653105 (25 bp)
ATTGCAGTCCTCAGTTTCTGATCAG
LOC_Os07g39480
Os.18862.1.S1_at--895--5071Chr07:23653042..23653066 (25 bp)
GCAGCCCATGGGTTCAGTATACAGT
LOC_Os07g39480
Os.18862.1.S1_at--626--8091Chr07:23652901..23652925 (25 bp)
GGACCATTCGGCTAACTTATGCTAC
LOC_Os07g39480
Os.18862.1.S1_at--247--1191Chr07:23652876..23652900 (25 bp)
AGTACCGCCGGCAATTTAGTCATGG
LOC_Os07g39480
Os.18862.1.S1_at--163--4911Chr07:23652798..23652822 (25 bp)
GCTTCGTATTGACATTCTCTTCAGA
LOC_Os07g39480
Os.18862.1.S1_at--826--1611Chr07:23652730..23652754 (25 bp)
AGCTGTACCTGTGGGCTGCAGCAAA
LOC_Os07g39480
Target Sequence 
GAAGTCCCTGCGTCGAGGAATGCGAGCCATGAGATGTCCACTCCCCCCATGAAGCCTGTTGTCCATCCAATTAACAGCAA
TATGCAGGGCCTTGGTGGCATGATGAGAGCATGTGAACCTAGGACATTTCCAAACCAATATTCTCAAGCAGCTGAAAGTG
ACACCATCAGCCTTGATCTTGGTGTTGGAATCAGCCCGAACCACAGCGATGCCACAAACCAATTGCAGTCCTCAGTTTCT
GATCAGATGCAGTATCAAATGCAGCCCATGGGTTCAGTATACAGTAATATGGGACTTCCAGCAATGGCAATGCCGACTAT
GGCTGGCAATGCAGCTAGCAATATATATGGTTCGAGAGAAGAAAAACCTAGTGAAGGTTTTACTTTCAAAGCCACACCGA
TGGACCATTCGGCTAACTTATGCTACAGTACCGCCGGCAATTTAGTCATGGGTCCGTGAGAGTCTATACTAATGCTTATA
GCTCGAGAATCATATATTACCANTGCTTCGTATTGACATTCTCTTCAGAAAGATGCTCCTATCATTGACACATCAGTTGA
ACCGGAGGCGAGAGCTGTACCTGTGGGCTGCAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis