Browse Element(s) Details


OsAffx.5577.1.S1_at

Description tigr:9635.m03935
TID=OsAffx.5577.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3946011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39410OsAffx.26175.1.S1_at1/117+23604247..23607276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g39420NANA7+23611029..23611592retrotransposon protein, putative, unclassified
LOC_Os07g39430Os.10501.1.S1_at10/117+23617995..23621471mTERF family protein, expressed
LOC_Os07g39440OsAffx.28821.1.S1_at11/117+23622670..23626254Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os07g39450OsAffx.16638.1.S1_at11/117+23631179..23631717hypothetical protein
LOC_Os07g39460OsAffx.5577.1.S1_at11/117+23632184..23641506RNA recognition motif family protein, expressed
LOC_Os07g39460OsAffx.32220.1.A1_s_at1/117+23632184..23641506RNA recognition motif family protein, expressed
LOC_Os07g39470Os.10061.1.S1_at11/117+23648831..23652377Chitin-inducible gibberellin-responsive protein 2, putative, expressed
LOC_Os07g39480Os.18862.1.S1_at11/117+23652442..23657931SUSIBA2, putative, expressed
LOC_Os07g39490NANA7+23663330..23664122hypothetical protein
LOC_Os07g39500OsAffx.29384.3.S1_x_at10/117+23666427..23668732hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5577.1.S1_at--1074--251Chr07:23632760..23632784 (25 bp)
ATATGAGCCCCATCACAAATGCAAG
LOC_Os07g39460
OsAffx.5577.1.S1_at--85--1311Chr07:23632659..23632683 (25 bp)
AGATGACCATTCCTAGCTTTGCAAA
LOC_Os07g39460
OsAffx.5577.1.S1_at--252--6131Chr07:23632621..23632645 (25 bp)
GAGTGGAACTTGACTCCTTCAAGAA
LOC_Os07g39460
OsAffx.5577.1.S1_at--247--5171Chr07:23632588..23632612 (25 bp)
GCAAGAGCTAGGAGGCTGGCCCTAA
LOC_Os07g39460
OsAffx.5577.1.S1_at--1139--3031Chr07:23632492..23632516 (25 bp)
AATCCTGGGAGTTCTTTCTATCTTA
LOC_Os07g39460
OsAffx.5577.1.S1_at--197--6971Chr07:23632446..23632470 (25 bp)
GTAGCTTGTACTTCTCACTAGATGT
LOC_Os07g39460
OsAffx.5577.1.S1_at--287--6671Chr07:23632398..23632422 (25 bp)
GTTGCAGGCCAATCATTTGTCTGGA
LOC_Os07g39460
OsAffx.5577.1.S1_at--752--8851Chr07:23632319..23632343 (25 bp)
TGATCCCAATGACTGCATATACCCC
LOC_Os07g39460
OsAffx.5577.1.S1_at--246--5351Chr07:23632276..23632300 (25 bp)
GAAGTTGAGTCTTTCAGCACATGGA
LOC_Os07g39460
OsAffx.5577.1.S1_at--969--8131Chr07:23632254..23632278 (25 bp)
GGACATGGTTTCTTGATACCTTGAA
LOC_Os07g39460
OsAffx.5577.1.S1_at--397--7671Chr07:23632219..23632243 (25 bp)
GGGATAGTGAACACCTCTCCATGGA
LOC_Os07g39460
Target Sequence 
ATATGAGCCCCATCACAAATGCAAGAAGGAGTGGATTCTAAAAAGGTGTACTGCAAAATGGTTAGCTGAAAAGTACACTG
AGTCATTTAGGGCTGATGGGAAGATGACCATTCCTAGCTTTGCAAAGACAGTACAAAAAGAGTGGAACTTGACTCCTTCA
AGAAGCAAGCTTGCAAGAGCTAGGAGGCTGGCCCTAAAAGAGATATATGGTGATGAAATAGCCCAATACAACTTGTTGTG
GGATTATGGCAATGAACTAAGGAGGTCCAATCCTGGGAGTTCTTTCTATCTTAGGTTAGATGAGGGCAAATTTAGTAGCT
TGTACTTCTCACTAGATGTATGCAAGAGAGGATTCCTCAGTGGTTGCAGGCCAATCATTTGTCTGGATGGTTGCCACATC
AAGACCAAATTTGGAGGTCAATTGTTGACAGCAGTTGGAATTGATCCCAATGACTGCATATACCCCATTGCAATGGCTGT
GGTAGAAGTTGAGTCTTTCAGCACATGGACATGGTTTCTTGATACCTTGAAGACTGAACTTGGGATAGTGAACACCTCTC
CATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis