Browse Element(s) Details


Os.46375.1.S1_at

Description gb:AK121047.1
DB_XREF= gi:37990670
TID=Os.46375.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46375 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055F01, full insert sequence.
FL= gb:AK121047.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3940010/11Ribosome associated membrane protein RAMP4 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39350Os.6931.1.S1_at11/117+23580371..23582854Sugar transporter family protein, expressed
LOC_Os07g39360Os.49972.1.S1_at11/117+23583007..23584768sorbitol transporter, putative, expressed
LOC_Os07g39370OsAffx.28820.1.S1_at11/117+23587214..23588187hypothetical protein
LOC_Os07g39380NANA7+23588762..23593114retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39390Os.6256.3.S1_at11/117+23594593..23596586expressed protein
LOC_Os07g39390Os.6256.3.S1_x_at11/117+23594593..23596586expressed protein
LOC_Os07g39400Os.46375.1.S1_at10/117+23596945..23602672Ribosome associated membrane protein RAMP4 containing protein, expressed
LOC_Os07g39410OsAffx.26175.1.S1_at1/117+23604247..23607276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g39420NANA7+23611029..23611592retrotransposon protein, putative, unclassified
LOC_Os07g39430Os.10501.1.S1_at10/117+23617995..23621471mTERF family protein, expressed
LOC_Os07g39440OsAffx.28821.1.S1_at11/117+23622670..23626254Zinc finger C-x8-C-x5-C-x3-H type family protein

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46375.1.S1_at--511--1751Chr07:23600704..23600728 (25 bp)
ACCTCAAGGCGTCTCTCAGATAGGA
LOC_Os07g39400
Os.46375.1.S1_at--507--6551Chr07:23600611..23600635 (25 bp)
GATTATCCTGTTGGACCCATTGTGC
LOC_Os07g39400
Os.46375.1.S1_at--99--3612Chr07:23600594..23600618 (25 bp)
CATTGTGCTTGGATTTTTCGTCTTT
LOC_Os07g39400
Os.46375.1.S1_at--437--10251Chr07:23600419..23600596 (25 bp)
TTTGTGGTTGTTGGTTCATCTCTCT
LOC_Os07g39400
Os.46375.1.S1_at--188--10331Chr07:23599817..23599841 (25 bp)
TTTCAGATCATCAGGACAGCCCAAA
LOC_Os07g39400
Os.46375.1.S1_at--1046--10591Chr07:23599781..23599805 (25 bp)
TTCTGAGAACTGTAGTGGCCGCTTA
LOC_Os07g39400
Os.46375.1.S1_at--46--10191Chr07:23599752..23599776 (25 bp)
TATAGTCTCGGTTACCTTCAGGAAC
LOC_Os07g39400
Os.46375.1.S1_at--154--271Chr07:23599718..23599742 (25 bp)
ATATGTAGCTGTTCGTCACTCCAAA
LOC_Os07g39400
Os.46375.1.S1_at--420--6711Chr07:23599670..23599694 (25 bp)
GTTCGCTATGATGTTACCTTGTCGT
LOC_Os07g39400
Os.46375.1.S1_at--1001--9371Chr07:23599649..23599673 (25 bp)
TCGTTGTACCGTGCCTTAAGTCATA
LOC_Os07g39400
Os.46375.1.S1_at--51--7691NONE
GGGTTACCACATAATCGCTTGAAGA
NONE
Target Sequence 
ACCTCAAGGCGTCTCTCAGATAGGAAAGTGGCACGGTTTGAGAAGAACGTCACCAAGAGGGGTTCTGTTCCTGAGACAGT
CAAGAAAGGAAATGATTATCCTGTTGGACCCATTGTGCTTGGATTTTTCGTCTTTGTGGTTGTTGGTTCATCTCTCTTTC
AGATCATCAGGACAGCCCAAAATGCTGGATACTTCTGAGAACTGTAGTGGCCGCTTATATATATAGTCTCGGTTACCTTC
AGGAACATGGTTGATATATGTAGCTGTTCGTCACTCCAAAAGGAGAAACTTATGGCATAGCTAGTTCGCTATGATGTTAC
CTTGTCGTTGTACCGTGCCTTAAGTCATACAGATAACAGATCGATATATACCCAGTTATACTTGGTGCTTAANNNNNANN
NNNANNNNNNNNNNANAANANNNNNNANNNNNNNNNNNANNNNANNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCCGGGGTTACCACATAATCGCTTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis