Browse Element(s) Details


Os.6271.1.S1_at

Description gb:AY559047.1
DB_XREF= gi:45593099
GEN=hox14
TID=Os.6271.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6271 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) homeodomain leucine zipper protein 14 (hox14) mRNA, complete cds.
PROD=homeodomain leucine zipper protein 14
FL= gb:AY559047.1 gb:AK121889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3932011/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39300Os.8749.1.S1_at11/117+23525572..23533785expressed protein
LOC_Os07g39310OsAffx.5576.1.S1_at11/117+23539211..23541545Zinc finger, C2H2 type family protein, expressed
LOC_Os07g39320Os.6271.1.S1_at11/117+23557833..23559168Homeobox domain containing protein, expressed
LOC_Os07g39330OsAffx.16635.1.S1_at10/117+23560477..23560780hypothetical protein
LOC_Os07g39340Os.43764.1.A1_at3/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39340OsAffx.24046.7.S1_x_at2/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39340OsAffx.24046.2.S1_x_at2/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39340OsAffx.24046.3.S1_x_at1/117+23564441..23566897hAT family dimerisation domain containing protein
LOC_Os07g39350Os.6931.1.S1_at11/117+23580371..23582854Sugar transporter family protein, expressed
LOC_Os07g39360Os.49972.1.S1_at11/117+23583007..23584768sorbitol transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009733biological_processresponse to auxin stimulus
GO:0009965biological_processleaf morphogenesis
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6271.1.S1_at--867--1691Chr07:23558736..23558760 (25 bp)
AGCCACACGGCCTCCGGAGAAGGCG
LOC_Os07g39320
Os.6271.1.S1_at--175--1471Chr07:23558753..23558777 (25 bp)
AGAAGGCGGAGACATCATGGGCTTA
LOC_Os07g39320
Os.6271.1.S1_at--703--9951Chr07:23558910..23558934 (25 bp)
TACGCTGATAACAGTGTGGTTGAGT
LOC_Os07g39320
Os.6271.1.S1_at--413--8671Chr07:23558924..23558948 (25 bp)
TGTGGTTGAGTGGTTCAGCCTGTAT
LOC_Os07g39320
Os.6271.1.S1_at--671--7891Chr07:23558935..23558959 (25 bp)
GGTTCAGCCTGTATGGATTGATCTA
LOC_Os07g39320
Os.6271.1.S1_at--782--1671Chr07:23558940..23558964 (25 bp)
AGCCTGTATGGATTGATCTAACGAA
LOC_Os07g39320
Os.6271.1.S1_at--1093--7591Chr07:23558990..23559014 (25 bp)
GGGAATTTAGTTAGTCATAGTGTTA
LOC_Os07g39320
Os.6271.1.S1_at--554--9791Chr07:23559017..23559041 (25 bp)
TAAGCTGTATGGTGATCGATCGAAC
LOC_Os07g39320
Os.6271.1.S1_at--907--9771Chr07:23559057..23559081 (25 bp)
TAAGTGTGTGTGTTTAATTATGTAC
LOC_Os07g39320
Os.6271.1.S1_at--675--851Chr07:23559094..23559118 (25 bp)
ATGGCAAAACCTGGCCAGCTAGCTA
LOC_Os07g39320
Os.6271.1.S1_at--314--8451Chr07:23559106..23559130 (25 bp)
GGCCAGCTAGCTAGTAATGTATTAA
LOC_Os07g39320
Target Sequence 
AGCCACACGGCCTCCGGAGAAGGCGGAGACATCATGGGCTTAGGCGGCAGCGGCGCCTGCGTCGCCGGGAGCCCGAGNTC
GTCGTTCTNGACGGGTACCTGCCAGCCGCCGAGNTTCGGCGGCGGAGATCNCNTCGGAGACGATGACCTGGTGTATGTCC
CGGAGTACGGCGGNTACGCTGATAACAGTGTGGTTGAGTGGTTCAGCCTGTATGGATTGATCTAACGAAGATCAAGTTGA
TGATGGCATGTGCGGGGAATTTAGTTAGTCATAGTGTTAATTAAGCTGTATGGTGATCGATCGAACTGATATGGTCAGCT
NTAAGTGTGTGTGTTTAATTATGTACATAAAGTGATTAATGGCAAAACCTGGCCAGCTAGCTAGTAATGTATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis