Browse Element(s) Details


OsAffx.2758.1.S1_at

Description tigr:9630.m02467
TID=OsAffx.2758.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2620011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26170OsAffx.12199.1.S1_x_at11/112+15362388..15362723hypothetical protein
LOC_Os02g26180Os.26886.3.S1_x_at4/112+15363708..15366588transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g26180Os.26886.1.S1_x_at2/112+15363708..15366588transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g26190Os.26886.1.S1_x_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.26886.2.S1_s_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.26886.6.S1_s_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.26148.1.S1_at6/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.26148.1.S1_x_at5/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.16467.1.S1_at3/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.52395.1.S1_x_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.16244.1.S1_x_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.11944.1.S2_s_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.51123.1.S1_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.49954.1.S1_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26200OsAffx.2758.1.S1_at11/112+15385454..15388101hypothetical protein
LOC_Os02g26210Os.47445.1.S1_at10/112+15391615..15392735flowering promoting factor-like 1, putative, expressed
LOC_Os02g26220NANA2+15398031..15398381hypothetical protein
LOC_Os02g26230OsAffx.24430.1.S1_at11/112+15401669..15404723expressed protein
LOC_Os02g26230OsAffx.3301.1.S1_at1/112+15401669..15404723expressed protein
LOC_Os02g26240OsAffx.30013.5.S1_x_at2/112+15409428..15412239retrotransposon protein, putative, unclassified
LOC_Os02g26240Os.56292.1.S1_at1/112+15409428..15412239retrotransposon protein, putative, unclassified
LOC_Os02g26240Os.56292.1.S1_x_at1/112+15409428..15412239retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2758.1.S1_at--871--8172Chr04:12269592..12269734 (24 bp)
GGAAGCGGTTTCTCTTTGTCCTCTG
NONE
OsAffx.2758.1.S1_at--25--3391Chr02:15387869..15387893 (25 bp)
CAGCCTTCTGCGGAGGCGACAAAAA
LOC_Os02g26200
OsAffx.2758.1.S1_at--771--6491Chr02:15387782..15387861 (25 bp)
GATAGGACACCGGTCACCGGAGCTT
LOC_Os02g26200
OsAffx.2758.1.S1_at--831--8071Chr02:15387764..15387788 (25 bp)
GGAGCTTTGCCCGAGCCGAATGCAA
LOC_Os02g26200
OsAffx.2758.1.S1_at--219--5571Chr02:15387575..15387599 (25 bp)
GAAAGATGTCCGGTATTCAGATTTA
LOC_Os02g26200
OsAffx.2758.1.S1_at--284--451Chr02:15385833..15385857 (25 bp)
ATCTACGAAGGAAGCCAGCGCGCGG
LOC_Os02g26200
OsAffx.2758.1.S1_at--240--4531Chr02:15385733..15385757 (25 bp)
GCCCTCGAGAGGGTTGGATCCGACA
LOC_Os02g26200
OsAffx.2758.1.S1_at--166--5991Chr02:15385727..15385751 (25 bp)
GAGAGGGTTGGATCCGACACCCTTG
LOC_Os02g26200
OsAffx.2758.1.S1_at--362--1811Chr02:15385709..15385733 (25 bp)
ACCCTTGGCCCCTGAATGGGTGACG
LOC_Os02g26200
OsAffx.2758.1.S1_at--700--1491Chr02:15385611..15385635 (25 bp)
AGCAACAGCAGACCTCGAGGGCAGT
LOC_Os02g26200
OsAffx.2758.1.S1_at--180--1531Chr02:15385605..15385629 (25 bp)
AGCAGACCTCGAGGGCAGTGGATCC
LOC_Os02g26200
Target Sequence 
GGAAGCGGTTTCTCTTTGTCCTCTGCCAGCGTGCGCCTCCTCCTCAGCCTTCTGCGGAGGCGACAAAAAGCATGGAGATA
GGACACCGGTCACCGGAGCTTTGCCCGAGCCGAATGCAAAGAGAGAGTTGAGGGTGAAAGATGTCCGGTATTCAGATTTA
GGGGATCTACGAAGGAAGCCAGCGCGCGGGGTGGCTTGTGGAGGTGGCGATGAGGATATCGGGCGAGATGGAAGAAGCTC
GAGGGTGGTGGATCCAGCAGCGCCGCCCTCGAGAGGGTTGGATCCGACACCCTTGGCCCCTGAATGGGTGACGGCGGAGC
TCGAGGGCGGCGGGTCCGGTAGTGCCGCCCTCCGGAGGGGCGGATCTGCCATCCTTAGCCCCGGGCAGCAACAGCAGACC
TCGAGGGCAGTGGATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis