Browse Element(s) Details


OsAffx.12199.1.S1_x_at

Description tigr:9630.m02461
TID=OsAffx.12199.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F22O13.28
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2617011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26110NANA2+15331835..15337799retrotransposon protein, putative, unclassified
LOC_Os02g26120Os.14508.2.S1_x_at1/112+15340359..15342921hypothetical protein
LOC_Os02g26130OsAffx.2755.1.S1_at10/112+15345379..15347977hypothetical protein
LOC_Os02g26140OsAffx.24428.1.S1_at11/112+15352039..15353478microtubule-binding protein TANGLED1, putative, expressed
LOC_Os02g26150OsAffx.2756.1.S1_at11/112+15356439..15356675hypothetical protein
LOC_Os02g26160OsAffx.2757.1.S1_at11/112+15357422..15359598Protein kinase domain containing protein, expressed
LOC_Os02g26170OsAffx.12199.1.S1_x_at11/112+15362388..15362723hypothetical protein
LOC_Os02g26180Os.26886.3.S1_x_at4/112+15363708..15366588transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g26180Os.26886.1.S1_x_at2/112+15363708..15366588transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g26190Os.26886.1.S1_x_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.26886.2.S1_s_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.26886.6.S1_s_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.26148.1.S1_at6/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.26148.1.S1_x_at5/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.16467.1.S1_at3/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.52395.1.S1_x_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.16244.1.S1_x_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.11944.1.S2_s_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.51123.1.S1_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.49954.1.S1_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26200OsAffx.2758.1.S1_at11/112+15385454..15388101hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12199.1.S1_x_at--878--7351Chr02:15362669..15362693 (25 bp)
GTGAACGAGGCAGCCGCGACCAGCA
LOC_Os02g26170
OsAffx.12199.1.S1_x_at--161--4071Chr02:15362664..15362688 (25 bp)
CGAGGCAGCCGCGACCAGCAGAGAA
LOC_Os02g26170
OsAffx.12199.1.S1_x_at--1028--5071Chr02:15362660..15362684 (25 bp)
GCAGCCGCGACCAGCAGAGAAGGCT
LOC_Os02g26170
OsAffx.12199.1.S1_x_at--683--1671Chr02:15362658..15362682 (25 bp)
AGCCGCGACCAGCAGAGAAGGCTTT
LOC_Os02g26170
OsAffx.12199.1.S1_x_at--1043--1351Chr02:15362645..15362669 (25 bp)
AGAGAAGGCTTTGGGCGGTGCCTGA
LOC_Os02g26170
OsAffx.12199.1.S1_x_at--897--7771Chr02:15362629..15362653 (25 bp)
GGTGCCTGACCGACGCAGACCTCGA
LOC_Os02g26170
OsAffx.12199.1.S1_x_at--158--5831Chr02:15362622..15362646 (25 bp)
GACCGACGCAGACCTCGACGAGCTG
LOC_Os02g26170
OsAffx.12199.1.S1_x_at--597--4432Chr10:18665075..18665113 (25 bp)
GCTCCTTCGAGCTCGGGTTCGGTTT
NONE
OsAffx.12199.1.S1_x_at--1113--9271Chr02:15362587..15362611 (25 bp)
TCGAGCTCGGGTTCGGTTTCGACAA
LOC_Os02g26170
OsAffx.12199.1.S1_x_at--993--9891Chr02:15362576..15362600 (25 bp)
TTCGGTTTCGACAAGGAGAAAGGAG
LOC_Os02g26170
OsAffx.12199.1.S1_x_at--525--8391Chr02:15362426..15362450 (25 bp)
GGCGCGTCATCGAGCCCTCAGTTTT
LOC_Os02g26170
Target Sequence 
GTGAACGAGGCAGCCGCGACCAGCAGAGAAGGCTTTGGGCGGTGCCTGACCGACGCAGACCTCGACGAGCTGAGGGGCTC
CTTCGAGCTCGGGTTCGGTTTCGACAAGGAGAAAGGAGGCGCCGGCCTCTGCGACACCCTCCCGGCCCTCGACCTCTACT
TCACCGTCAACCGGCAGCGCCTCTCCGACGGCTCCAAGCTGCGGAGCCCCACGTCGACGCTGTCGTCGTCCACGCTGATC
TCCGGCGCGTCATCGAGCCCTCAGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12199.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis