Browse Element(s) Details


OsAffx.24428.1.S1_at

Description tigr:9630.m02458
TID=OsAffx.24428.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=microtubule-binding protein TANGLED1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2614011/11microtubule-binding protein TANGLED1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26100NANA2+15327723..15330939retrotransposon protein, putative, unclassified
LOC_Os02g26110NANA2+15331835..15337799retrotransposon protein, putative, unclassified
LOC_Os02g26120Os.14508.2.S1_x_at1/112+15340359..15342921hypothetical protein
LOC_Os02g26130OsAffx.2755.1.S1_at10/112+15345379..15347977hypothetical protein
LOC_Os02g26140OsAffx.24428.1.S1_at11/112+15352039..15353478microtubule-binding protein TANGLED1, putative, expressed
LOC_Os02g26150OsAffx.2756.1.S1_at11/112+15356439..15356675hypothetical protein
LOC_Os02g26160OsAffx.2757.1.S1_at11/112+15357422..15359598Protein kinase domain containing protein, expressed
LOC_Os02g26170OsAffx.12199.1.S1_x_at11/112+15362388..15362723hypothetical protein
LOC_Os02g26180Os.26886.3.S1_x_at4/112+15363708..15366588transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g26180Os.26886.1.S1_x_at2/112+15363708..15366588transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g26190Os.26886.1.S1_x_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.26886.2.S1_s_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.26886.6.S1_s_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.26148.1.S1_at6/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.26148.1.S1_x_at5/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.16467.1.S1_at3/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.52395.1.S1_x_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.16244.1.S1_x_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.11944.1.S2_s_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.51123.1.S1_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.49954.1.S1_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0004693molecular_functioncyclin-dependent protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24428.1.S1_at--634--6571Chr02:15352487..15352511 (25 bp)
GATTCTACAAGACTCGTTCCCCGAT
LOC_Os02g26140
OsAffx.24428.1.S1_at--755--5111Chr02:15352444..15352468 (25 bp)
GCACAAATTCCTGGTCAAGTCGCCG
LOC_Os02g26140
OsAffx.24428.1.S1_at--907--4911Chr02:15352411..15352435 (25 bp)
GCTTGGGTCCAAGCTCAAAAGCCAT
LOC_Os02g26140
OsAffx.24428.1.S1_at--587--2431Chr02:15352395..15352419 (25 bp)
AAAAGCCATGGCAAGCTTCTCCCTT
LOC_Os02g26140
OsAffx.24428.1.S1_at--894--7231Chr02:15352354..15352378 (25 bp)
GTCGCCACCTGGCAAAGTGCAAGTG
LOC_Os02g26140
OsAffx.24428.1.S1_at--414--6691Chr02:15352288..15352312 (25 bp)
GTTCTCGCCGTCACGTTTGGTATCA
LOC_Os02g26140
OsAffx.24428.1.S1_at--1--1951Chr02:15352264..15352288 (25 bp)
ACGGCTCGTGTCATCGCCAGGCAAA
LOC_Os02g26140
OsAffx.24428.1.S1_at--404--891Chr02:15352235..15352259 (25 bp)
AGGCTGCGGCGTCAAACAACAACAA
LOC_Os02g26140
OsAffx.24428.1.S1_at--129--2231Chr02:15352208..15352232 (25 bp)
ACAAGGGCCGGCGATGCTCGTTCTC
LOC_Os02g26140
OsAffx.24428.1.S1_at--379--371Chr02:15352149..15352173 (25 bp)
ATCAAGGCGAGGTTGTCTCTGAACA
LOC_Os02g26140
OsAffx.24428.1.S1_at--577--1511Chr02:15352073..15352097 (25 bp)
AGCAGCGACCGGGAGTCAGCATGAC
LOC_Os02g26140
Target Sequence 
GATTCTACAAGACTCGTTCCCCGATCATCGCCAGGCAGACTCCGCACAAATTCCTGGTCAAGTCGCCGCCGAGCTCGCTT
GGGTCCAAGCTCAAAAGCCATGGCAAGCTTCTCCCTTCAAGGCCATTCACCGTGTCGCCACCTGGCAAAGTGCAAGTGGC
GGCGGCGGCGGCATCGGTGTCCAAGACCCGGCGCTGCACGTTCTCGCCGTCACGTTTGGTATCACGGCTCGTGTCATCGC
CAGGCAAAGCGCAGGCTGCGGCGTCAAACAACAACAACAACAAGGGCCGGCGATGCTCGTTCTCCCCGTCACGGTTGGCG
ACAAGGCTCGTGTCGCCGATCAAGGCGAGGTTGTCTCTGAACAGGAGCCGGGACGGTGGCGTCCATGGCGGCGGCGGCAT
GGTGTGCGGGCTGAAGCAGCGACCGGGAGTCAGCATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis