Browse Element(s) Details


OsAffx.2755.1.S1_at

Description tigr:9630.m02457
TID=OsAffx.2755.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2613010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26100NANA2+15327723..15330939retrotransposon protein, putative, unclassified
LOC_Os02g26110NANA2+15331835..15337799retrotransposon protein, putative, unclassified
LOC_Os02g26120Os.14508.2.S1_x_at1/112+15340359..15342921hypothetical protein
LOC_Os02g26130OsAffx.2755.1.S1_at10/112+15345379..15347977hypothetical protein
LOC_Os02g26140OsAffx.24428.1.S1_at11/112+15352039..15353478microtubule-binding protein TANGLED1, putative, expressed
LOC_Os02g26150OsAffx.2756.1.S1_at11/112+15356439..15356675hypothetical protein
LOC_Os02g26160OsAffx.2757.1.S1_at11/112+15357422..15359598Protein kinase domain containing protein, expressed
LOC_Os02g26170OsAffx.12199.1.S1_x_at11/112+15362388..15362723hypothetical protein
LOC_Os02g26180Os.26886.3.S1_x_at4/112+15363708..15366588transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g26180Os.26886.1.S1_x_at2/112+15363708..15366588transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g26190Os.26886.1.S1_x_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.26886.2.S1_s_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.26886.6.S1_s_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.26148.1.S1_at6/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.26148.1.S1_x_at5/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.16467.1.S1_at3/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.52395.1.S1_x_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.16244.1.S1_x_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.11944.1.S2_s_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.51123.1.S1_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.49954.1.S1_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2755.1.S1_at--756--4451Chr02:15347923..15347947 (25 bp)
GCCTACATTATTGGTTCTTTGATCA
LOC_Os02g26130
OsAffx.2755.1.S1_at--1027--6451Chr02:15347903..15347927 (25 bp)
GATCAAGTTATCACTAGCTGCTGTC
LOC_Os02g26130
OsAffx.2755.1.S1_at--822--9691Chr02:15347893..15347917 (25 bp)
TCACTAGCTGCTGTCCTGGATATTA
LOC_Os02g26130
OsAffx.2755.1.S1_at--149--10091Chr02:15347345..15347368 (24 bp)
TAGGTTTGGCATGGACTGGTTCCTC
LOC_Os02g26130
OsAffx.2755.1.S1_at--860--10593Chr07:14941468..14941488 (21 bp)
TTCCTCCTCGATGTAACCCTTATTG
NONE
OsAffx.2755.1.S1_at--48--8752Chr09:2749357..2749380 (24 bp)
TGTAACCCTTATTGTCCTCAACGTA
NONE
OsAffx.2755.1.S1_at--459--3171Chr02:15346150..15346174 (25 bp)
AATTGTCTATGTATACGTGGTCCCA
LOC_Os02g26130
OsAffx.2755.1.S1_at--719--311Chr02:15346138..15346162 (25 bp)
ATACGTGGTCCCATCTATTTTGGTG
LOC_Os02g26130
OsAffx.2755.1.S1_at--135--10211Chr02:15346123..15346147 (25 bp)
TATTTTGGTGCCTTGGTCCGCATCT
LOC_Os02g26130
OsAffx.2755.1.S1_at--1063--7231Chr02:15346108..15346132 (25 bp)
GTCCGCATCTGTCCCTAGTGGAAGT
LOC_Os02g26130
OsAffx.2755.1.S1_at--905--8071NONE
GGAGCTGGTCCATAAGATTGAAAAA
NONE
Target Sequence 
GCCTACATTATTGGTTCTTTGATCAAGTTATCACTAGCTGCTGTCCTGGATATTAATAGGTTTGGCATGGACTGGTTCCT
CCTCGATGTAACCCTTATTGTCCTCAACGTAACCCATCCTTCTTGGCGTGGTGATGATGTCCTCGGGTGTAAACTTGAGC
AATACAAATGTAGAGCATTTAGAACAAATCTCATAATAGATCTAAAGATTCAAAATTACGTGAAACTTACATACAAGTTA
CACTATAGTTACATAGAAAAATTGTCTATGTATACGTGGTCCCATCTATTTTGGTGCCTTGGTCCGCATCTGTCCCTAGT
GGAAGTGGAGCTGGTCCATAAGATTGAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis