Browse Element(s) Details


OsAffx.2757.1.S1_at

Description tigr:9630.m02460
TID=OsAffx.2757.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to receptor lectin kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2616011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26110NANA2+15331835..15337799retrotransposon protein, putative, unclassified
LOC_Os02g26120Os.14508.2.S1_x_at1/112+15340359..15342921hypothetical protein
LOC_Os02g26130OsAffx.2755.1.S1_at10/112+15345379..15347977hypothetical protein
LOC_Os02g26140OsAffx.24428.1.S1_at11/112+15352039..15353478microtubule-binding protein TANGLED1, putative, expressed
LOC_Os02g26150OsAffx.2756.1.S1_at11/112+15356439..15356675hypothetical protein
LOC_Os02g26160OsAffx.2757.1.S1_at11/112+15357422..15359598Protein kinase domain containing protein, expressed
LOC_Os02g26170OsAffx.12199.1.S1_x_at11/112+15362388..15362723hypothetical protein
LOC_Os02g26180Os.26886.3.S1_x_at4/112+15363708..15366588transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g26180Os.26886.1.S1_x_at2/112+15363708..15366588transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g26190Os.26886.1.S1_x_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.26886.2.S1_s_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.26886.6.S1_s_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.26148.1.S1_at6/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.26148.1.S1_x_at5/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.16467.1.S1_at3/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.52395.1.S1_x_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.16244.1.S1_x_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.11944.1.S2_s_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.51123.1.S1_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.49954.1.S1_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2757.1.S1_at--113--391Chr02:15358998..15359022 (25 bp)
ATCAGCGCTAGCATATCTGCATGAT
LOC_Os02g26160
OsAffx.2757.1.S1_at--611--6071Chr02:15359083..15359107 (25 bp)
GAGTTCAATGCTCGGCTAGGTGATT
LOC_Os02g26160
OsAffx.2757.1.S1_at--288--171Chr02:15359105..15359129 (25 bp)
ATTTTGGCCTTGCTCGCACTGTGAG
LOC_Os02g26160
OsAffx.2757.1.S1_at--153--1691Chr02:15359128..15359152 (25 bp)
AGCCATGGTGGGTTGCCACTTACAA
LOC_Os02g26160
OsAffx.2757.1.S1_at--315--4371Chr02:15359261..15359285 (25 bp)
CCACTGGACGAAGGCCTGCTGAGAG
LOC_Os02g26160
OsAffx.2757.1.S1_at--290--8331Chr02:15359357..15359381 (25 bp)
GGCTCCAGGGACGATTTGTTGCAGA
LOC_Os02g26160
OsAffx.2757.1.S1_at--516--9071Chr02:15359399..15359423 (25 bp)
TGCTTGTGGGTCTGTGTTGTGTACA
LOC_Os02g26160
OsAffx.2757.1.S1_at--351--6631Chr02:15359414..15359438 (25 bp)
GTTGTGTACATCCAGACTGCCGGAA
LOC_Os02g26160
OsAffx.2757.1.S1_at--67--6911Chr02:15359465..15359489 (25 bp)
GTATGCTTGATGGTACTGCACCGTT
LOC_Os02g26160
OsAffx.2757.1.S1_at--185--6471Chr02:15359503..15359527 (25 bp)
GATAAGATGCCACCAGTTCTTCTAC
LOC_Os02g26160
OsAffx.2757.1.S1_at--295--1211Chr02:15359517..15359541 (25 bp)
AGTTCTTCTACAGCCAGTACCAAAT
LOC_Os02g26160
Target Sequence 
ATCAGCGCTAGCATATCTGCATGATGAGTGTGAGAACCGGATTATACATCGTGATGTCAAGTCATCAAATGTTATGCTTG
ATGCAGAGTTCAATGCTCGGCTAGGTGATTTTGGCCTTGCTCGCACTGTGAGCCATGGTGGGTTGCCACTTACAACACAG
CCAGCAGGCACACTGGGGTACCTTGCACCAGAATATGTTCATACAGGGGTGGCTACAGAGCGGTCTGATGTGTACAGCTT
TGGGGTGCTTGCTCTGGAAGTGGCCACTGGACGAAGGCCTGCTGAGAGGGGAATCTCTGTTGTTAATTGGGTGTGGACTC
TATGGGGTCGTCGAAGGCTGGTTGATGCAGCAGACCGGCGGCTCCAGGGACGATTTGTTGCAGATGAGATGCGACGGGTG
CTGCTTGTGGGTCTGTGTTGTGTACATCCAGACTGCCGGAAGCGGCCTGGTATGCGAAGGGTAGTCAGTATGCTTGATGG
TACTGCACCGTTGATATTGGTACCAGATAAGATGCCACCAGTTCTTCTACAGCCAGTACCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis