Browse Element(s) Details


OsAffx.2756.1.S1_at

Description tigr:9630.m02459
TID=OsAffx.2756.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2615011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26110NANA2+15331835..15337799retrotransposon protein, putative, unclassified
LOC_Os02g26120Os.14508.2.S1_x_at1/112+15340359..15342921hypothetical protein
LOC_Os02g26130OsAffx.2755.1.S1_at10/112+15345379..15347977hypothetical protein
LOC_Os02g26140OsAffx.24428.1.S1_at11/112+15352039..15353478microtubule-binding protein TANGLED1, putative, expressed
LOC_Os02g26150OsAffx.2756.1.S1_at11/112+15356439..15356675hypothetical protein
LOC_Os02g26160OsAffx.2757.1.S1_at11/112+15357422..15359598Protein kinase domain containing protein, expressed
LOC_Os02g26170OsAffx.12199.1.S1_x_at11/112+15362388..15362723hypothetical protein
LOC_Os02g26180Os.26886.3.S1_x_at4/112+15363708..15366588transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g26180Os.26886.1.S1_x_at2/112+15363708..15366588transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g26190Os.26886.1.S1_x_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.26886.2.S1_s_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.26886.6.S1_s_at7/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.26148.1.S1_at6/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.26148.1.S1_x_at5/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.16467.1.S1_at3/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.52395.1.S1_x_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190OsAffx.16244.1.S1_x_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.11944.1.S2_s_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.51123.1.S1_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g26190Os.49954.1.S1_at1/112+15368435..15383898transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2756.1.S1_at--695--6811Chr02:15356510..15356534 (25 bp)
GTGTTCGTCCCCACGTGGTTTTCTG
LOC_Os02g26150
OsAffx.2756.1.S1_at--214--4371Chr02:15356520..15356544 (25 bp)
CCACGTGGTTTTCTGCCCGACTACT
LOC_Os02g26150
OsAffx.2756.1.S1_at--123--6811Chr02:15356527..15356551 (25 bp)
GTTTTCTGCCCGACTACTCCTACAG
LOC_Os02g26150
OsAffx.2756.1.S1_at--154--5711Chr02:15356538..15356562 (25 bp)
GACTACTCCTACAGCAAGCACTGCA
LOC_Os02g26150
OsAffx.2756.1.S1_at--39--9871Chr02:15356547..15356571 (25 bp)
TACAGCAAGCACTGCATCCTAGACG
LOC_Os02g26150
OsAffx.2756.1.S1_at--589--1491Chr02:15356554..15356578 (25 bp)
AGCACTGCATCCTAGACGGCTTGAA
LOC_Os02g26150
OsAffx.2756.1.S1_at--777--1971Chr02:15356557..15356581 (25 bp)
ACTGCATCCTAGACGGCTTGAAGGG
LOC_Os02g26150
OsAffx.2756.1.S1_at--32--8871Chr02:15356596..15356620 (25 bp)
TGAGGGTGAAGACCTCGAGTTTCCC
LOC_Os02g26150
OsAffx.2756.1.S1_at--224--5351Chr02:15356603..15356627 (25 bp)
GAAGACCTCGAGTTTCCCGACGTCT
LOC_Os02g26150
OsAffx.2756.1.S1_at--364--6051Chr02:15356612..15356636 (25 bp)
GAGTTTCCCGACGTCTTTTGGGCAT
LOC_Os02g26150
OsAffx.2756.1.S1_at--321--4231Chr02:15356619..15356643 (25 bp)
CCGACGTCTTTTGGGCATCCTGAAG
LOC_Os02g26150
Target Sequence 
GTGTTCGTCCCCACGTGGTTTTCTGCCCGACTACTCCTACAGCAAGCACTGCATCCTAGACGGCTTGAAGGGGGAAGCGG
ACGGCATGAGGGTGAAGACCTCGAGTTTCCCGACGTCTTTTGGGCATCCTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis