Browse Element(s) Details


Os.49982.1.S1_at

Description gb:AK119480.1
DB_XREF= gi:37989103
TID=Os.49982.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49982 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-134-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-B12, full insert sequence.
FL= gb:AK119480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1014011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10109Os.16859.1.S1_at11/116+5157232..5164172expressed protein
LOC_Os06g10109Os.20998.1.S1_at10/116+5157232..5164172expressed protein
LOC_Os06g10118Os.52051.1.S1_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.52051.1.S1_x_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51903.1.S1_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51910.1.S1_x_at2/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51910.1.S1_at2/116+5166820..5178688expressed protein
LOC_Os06g10118OsAffx.14650.1.S1_x_at1/116+5166820..5178688expressed protein
LOC_Os06g10130Os.55254.1.S1_at11/116+5178776..5179749expressed protein
LOC_Os06g10140Os.49982.1.S1_at11/116+5185448..5187308expressed protein
LOC_Os06g10150OsAffx.15346.1.S1_at11/116+5194455..5194855hypothetical protein
LOC_Os06g10160Os.55624.1.S1_at11/116+5195740..5198449Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os06g10170Os.5265.1.S1_x_at11/116+5207686..5211331Flavin-binding monooxygenase-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49982.1.S1_at--517--9551Chr06:5186188..5186212 (25 bp)
TCTTTCTTACTATCACCTTTTCAGG
LOC_Os06g10140
Os.49982.1.S1_at--706--8291Chr06:5185803..5185827 (25 bp)
GGCTTCCACAAGGTGAATACGGCTA
LOC_Os06g10140
Os.49982.1.S1_at--129--10751Chr06:5185731..5185755 (25 bp)
TTGAATCTCTGCTACATGTCGTGGA
LOC_Os06g10140
Os.49982.1.S1_at--38--771Chr06:5185716..5185740 (25 bp)
ATGTCGTGGAAAGTGCCTCTATACT
LOC_Os06g10140
Os.49982.1.S1_at--1044--10251Chr06:5185685..5185709 (25 bp)
TTTGACTATTGAGGCGGCTGGCATG
LOC_Os06g10140
Os.49982.1.S1_at--131--4931Chr06:5185531..5185555 (25 bp)
GCTTGAGATGTATTTGAGGATTCCT
LOC_Os06g10140
Os.49982.1.S1_at--255--1011Chr06:5185515..5185539 (25 bp)
AGGATTCCTGTGTGCAAGGATCTGT
LOC_Os06g10140
Os.49982.1.S1_at--690--2911Chr06:5185500..5185524 (25 bp)
AAGGATCTGTTGTTAGCTGTGTGCA
LOC_Os06g10140
Os.49982.1.S1_at--44--4731Chr06:5185485..5185509 (25 bp)
GCTGTGTGCATGTATTCCATGGATC
LOC_Os06g10140
Os.49982.1.S1_at--636--6431Chr06:5185464..5185488 (25 bp)
GATCATTAGTAATTTTCGCAGGCCA
LOC_Os06g10140
Os.49982.1.S1_at--1107--9311Chr06:5185449..5185473 (25 bp)
TCGCAGGCCATATCCTTGATAACTC
LOC_Os06g10140
Target Sequence 
TCTTTCTTACTATCACCTTTTCAGGTGTCCTCGCTGCTGAAGAACACGTGCAAGTTTTCTCATCTGAAATATTTACAACT
AAAATTACGTCTATATTATCATGATTCGGGCAACATCCTCTCTTTGGCCTCTTTTCTCAGGGCCAGTCCTTGCATAGAGA
AGTTAGAAATACATTTCAATTCGTATGCTTTGTCACACTTGTATTATCAGCCTATCAGGAGGCTTCCACAAGGTGAATAC
GGCTATCTAAAGAACATGCATATTACTGGATTTGTTGCATCGACAGGCGAGCTTGAATCTCTGCTACATGTCGTGGAAAG
TGCCTCTATACTTGAAGTTTTGACTATTGAGGCGGCTGGCATGTTAGGGAAAGATATAGATTATGAAGGAAGATTAAAAG
TTGAGGAATTGACAAGAAGATACCTTGATGGGATAATGTTACGAAATACAAAGCTCTATATGGCATAAGTTATTGTAGTA
TAGAAGAGGTGTGCTTGAGATGTATTTGAGGATTCCTGTGTGCAAGGATCTGTTGTTAGCTGTGTGCATGTATTCCATGG
ATCATTAGTAATTTTCGCAGGCCATATCCTTGATAACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis