Browse Element(s) Details


Os.55254.1.S1_at

Description gb:AK107741.1
DB_XREF= gi:32992950
TID=Os.55254.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55254 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-G09, full insert sequence.
FL= gb:AK107741.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1013011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10109Os.16859.1.S1_at11/116+5157232..5164172expressed protein
LOC_Os06g10109Os.20998.1.S1_at10/116+5157232..5164172expressed protein
LOC_Os06g10118Os.52051.1.S1_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.52051.1.S1_x_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51903.1.S1_at11/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51910.1.S1_x_at2/116+5166820..5178688expressed protein
LOC_Os06g10118Os.51910.1.S1_at2/116+5166820..5178688expressed protein
LOC_Os06g10118OsAffx.14650.1.S1_x_at1/116+5166820..5178688expressed protein
LOC_Os06g10130Os.55254.1.S1_at11/116+5178776..5179749expressed protein
LOC_Os06g10140Os.49982.1.S1_at11/116+5185448..5187308expressed protein
LOC_Os06g10150OsAffx.15346.1.S1_at11/116+5194455..5194855hypothetical protein
LOC_Os06g10160Os.55624.1.S1_at11/116+5195740..5198449Protein kinase APK1A, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55254.1.S1_at--246--531Chr06:5179176..5179200 (25 bp)
ATCGACGGCGGCCAAGATTTGCTAC
LOC_Os06g10130
Os.55254.1.S1_at--1156--6371Chr06:5179462..5179486 (25 bp)
GATCGACGAGCTGAGTTTCTTCCTA
LOC_Os06g10130
Os.55254.1.S1_at--999--6811Chr06:5179476..5179500 (25 bp)
GTTTCTTCCTACTGCTGGTAAGCGA
LOC_Os06g10130
Os.55254.1.S1_at--409--5871Chr06:5179504..5179528 (25 bp)
GAGCCATTTTTCTTGAGTCATCTGT
LOC_Os06g10130
Os.55254.1.S1_at--449--3551Chr06:5179522..5179546 (25 bp)
CATCTGTGCTGGTTATGGGATCGAC
LOC_Os06g10130
Os.55254.1.S1_at--158--10831Chr06:5179558..5179582 (25 bp)
TTGTCCGAGAGTTAGTGTTCATCCT
LOC_Os06g10130
Os.55254.1.S1_at--979--6731Chr06:5179574..5179598 (25 bp)
GTTCATCCTGTGCTGTAACAAGATC
LOC_Os06g10130
Os.55254.1.S1_at--297--272Chr07:10167821..10168120 (25 bp)
ATATGTGCTGCAAGTGTGCTTTTCT
NONE
Os.55254.1.S1_at--730--3391Chr06:5179647..5179671 (25 bp)
CAGCTGCAACTCTTCGATACTTATT
LOC_Os06g10130
Os.55254.1.S1_at--1004--8111Chr06:5179691..5179715 (25 bp)
GGACTCGTGTTGTGGTATAGCGCAC
LOC_Os06g10130
Os.55254.1.S1_at--561--4591Chr06:5179710..5179734 (25 bp)
GCGCACACTATGTTGCAGTAGCATT
LOC_Os06g10130
Target Sequence 
ATCGACGGCGGCCAAGATTTGCTACCCCTCGCCGTCGCGGTTGTCCACGTGCTCCGTCCAGCTGCTGCAGCGACGACGTT
CTTCCTCTCCATGATGCTCATCTACACCCATGTCCGTGCTGTTGGCCGCGGTGAAGGGGGAGCCGGCGCCGCCGCCACCG
CCGCCGGGAACGTGCCGATCGCGACGACCACCGTGGAGCTCCTCGCCAAGCTGGTCCTCGCCGCTGCGCTTGTCACGGTC
GTTCTTACCCTCACTTCCACCGTCCTTGCTGCCTCCTACGCCGACTGATCGACGAGCTGAGTTTCTTCCTACTGCTGGTA
AGCGATTTGAGCCATTTTTCTTGAGTCATCTGTGCTGGTTATGGGATCGACAATGTTCAGACTTGTCCGAGAGTTAGTGT
TCATCCTGTGCTGTAACAAGATCGGATTATATGTGCTGCAAGTGTGCTTTTCTGGTCATTTTGTATGTGACCAGCTGCAA
CTCTTCGATACTTATTAATGGCTTGTGGATTTGATGGACTCGTGTTGTGGTATAGCGCACACTATGTTGCAGTAGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis