Browse Element(s) Details


OsAffx.15349.1.S1_at

Description tigr:9634.m00998
TID=OsAffx.15349.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1025010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10220OsAffx.4786.1.S1_at11/116+5236898..5239270hypothetical protein
LOC_Os06g10230Os.11476.1.S1_at11/116+5243152..5250844Leucine Rich Repeat family protein, expressed
LOC_Os06g10230OsAffx.10959.1.S1_at1/116+5243152..5250844Leucine Rich Repeat family protein, expressed
LOC_Os06g10240OsAffx.27546.1.S1_at10/116+5252679..5253095hypothetical protein
LOC_Os06g10240OsAffx.27546.1.S1_x_at8/116+5252679..5253095hypothetical protein
LOC_Os06g10250OsAffx.15349.1.S1_at10/116+5257956..5260613hypothetical protein
LOC_Os06g10260OsAffx.15350.1.S1_at11/116+5263604..5264959hypothetical protein
LOC_Os06g10269NANA6+5270723..5271311NA
LOC_Os06g10280NANA6+5278097..5284927CDP-alcohol phosphatidyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15349.1.S1_at--992--10691Chr06:5257987..5258442 (25 bp)
TTGCGCTCTGCATGGTGAGGGTTTA
LOC_Os06g10250
OsAffx.15349.1.S1_at--420--4791NONE
GCATGGTGAGGGTTTACCAAACCGT
NONE
OsAffx.15349.1.S1_at--390--1791Chr06:5258951..5258975 (25 bp)
ACCGTTCTGGGTGGAGTTAGCGCCA
LOC_Os06g10250
OsAffx.15349.1.S1_at--362--6051Chr06:5258964..5258988 (25 bp)
GAGTTAGCGCCATCCCACGGTTTAA
LOC_Os06g10250
OsAffx.15349.1.S1_at--37--551Chr06:5258975..5258999 (25 bp)
ATCCCACGGTTTAACGATCATCACG
LOC_Os06g10250
OsAffx.15349.1.S1_at--306--2591Chr06:5258987..5259011 (25 bp)
AACGATCATCACGAGGTGTACCGTA
LOC_Os06g10250
OsAffx.15349.1.S1_at--1043--3511Chr06:5258993..5259017 (25 bp)
CATCACGAGGTGTACCGTAATTTTA
LOC_Os06g10250
OsAffx.15349.1.S1_at--307--10391Chr06:5260492..5260516 (25 bp)
TTTTCGATTATGGAAGAAGCTCTCC
LOC_Os06g10250
OsAffx.15349.1.S1_at--990--1211Chr06:5260522..5260546 (25 bp)
AGTTCAACAGTGTCTGTGTGAGCCT
LOC_Os06g10250
OsAffx.15349.1.S1_at--550--3271Chr06:5260526..5260550 (25 bp)
CAACAGTGTCTGTGTGAGCCTGGTG
LOC_Os06g10250
OsAffx.15349.1.S1_at--310--4271Chr06:5260554..5260578 (25 bp)
CCTGTGCGGTGCGTTTGCAAGGACA
LOC_Os06g10250
Target Sequence 
TTGCGCTCTGCATGGTGAGGGTTTACCAAACCGTTCTGGGTGGAGTTAGCGCCATCCCACGGTTTAACGATCATCACGAG
GTGTACCGTAATTTTAAAACTGAGAAGGGAGTTTTCGATTATGGAAGAAGCTCTCCAAACAAGTTCAACAGTGTCTGTGT
GAGCCTGGTGGAGCCTGTGCGGTGCGTTTGCAAGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis