Browse Element(s) Details


OsAffx.15350.1.S1_at

Description tigr:9634.m00999
TID=OsAffx.15350.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to elicitor-inducible cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1026011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10220OsAffx.4786.1.S1_at11/116+5236898..5239270hypothetical protein
LOC_Os06g10230Os.11476.1.S1_at11/116+5243152..5250844Leucine Rich Repeat family protein, expressed
LOC_Os06g10230OsAffx.10959.1.S1_at1/116+5243152..5250844Leucine Rich Repeat family protein, expressed
LOC_Os06g10240OsAffx.27546.1.S1_at10/116+5252679..5253095hypothetical protein
LOC_Os06g10240OsAffx.27546.1.S1_x_at8/116+5252679..5253095hypothetical protein
LOC_Os06g10250OsAffx.15349.1.S1_at10/116+5257956..5260613hypothetical protein
LOC_Os06g10260OsAffx.15350.1.S1_at11/116+5263604..5264959hypothetical protein
LOC_Os06g10269NANA6+5270723..5271311NA
LOC_Os06g10280NANA6+5278097..5284927CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os06g10290OsAffx.15351.1.S1_at11/116+5287462..5292461F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009813biological_processflavonoid biosynthesis
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15350.1.S1_at--834--8131Chr06:5264447..5264471 (25 bp)
GGACACGGTGGCTGCTTGCAACGAC
LOC_Os06g10260
OsAffx.15350.1.S1_at--573--8471Chr06:5264439..5264463 (25 bp)
TGGCTGCTTGCAACGACGTCCCTGT
LOC_Os06g10260
OsAffx.15350.1.S1_at--975--3871Chr06:5264418..5264442 (25 bp)
CTGTCGGCACGCATGTACTGGTGAA
LOC_Os06g10260
OsAffx.15350.1.S1_at--112--9931Chr06:5264403..5264427 (25 bp)
TACTGGTGAACGTGTGTGCCATCGC
LOC_Os06g10260
OsAffx.15350.1.S1_at--766--5451Chr06:5264396..5264420 (25 bp)
GAACGTGTGTGCCATCGCGCGCAAC
LOC_Os06g10260
OsAffx.15350.1.S1_at--826--4011Chr06:5264367..5264391 (25 bp)
CGTCGTGGCCGGACCGCCTAGACGT
LOC_Os06g10260
OsAffx.15350.1.S1_at--534--4451Chr06:5264352..5264376 (25 bp)
GCCTAGACGTGTTCCTGCCGGAGCG
LOC_Os06g10260
OsAffx.15350.1.S1_at--659--4511Chr06:5263713..5264189 (25 bp)
GCCGACCTCTTATTCATTGGTGACG
LOC_Os06g10260
OsAffx.15350.1.S1_at--809--9591Chr06:5263700..5263724 (25 bp)
TCATTGGTGACGGATAGGATTCATC
LOC_Os06g10260
OsAffx.15350.1.S1_at--372--10091Chr06:5263686..5263710 (25 bp)
TAGGATTCATCGGAACTCGGAGGAT
LOC_Os06g10260
OsAffx.15350.1.S1_at--283--5471Chr06:5263674..5263698 (25 bp)
GAACTCGGAGGATGGCCACGCTACG
LOC_Os06g10260
Target Sequence 
GGACACGGTGGCTGCTTGCAACGACGTCCCTGTCGGCACGCATGTACTGGTGAACGTGTGTGCCATCGCGCGCAACCCGA
CGTCGTGGCCGGACCGCCTAGACGTGTTCCTGCCGGAGCGGTTCCTCCCTGGCGGCGGCGCCGGTGGAGTCCCCTGCCGC
CATCCTCCGCATCACCCACCGCCGACCACTTCTCCGTCACCATCCTCGTCGTCGTCTTCCTCATCCCCCGCTGTCGCAGC
CTCCGCGTNACCCGCCGGCTCCGCTTCGTGTTTCCCGCCGCCGCCGACCTCTTATTCATTGGTGACGGATAGGATTCATC
GGAACTCGGAGGATGGCCACGCTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis