Browse Element(s) Details


OsAffx.6086.1.S1_at

Description tigr:9636.m04016
TID=OsAffx.6086.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3974011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39694Os.5661.1.S1_s_at11/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.51910.1.S1_at10/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.51910.1.S1_x_at10/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.54695.1.S1_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.52051.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.38269.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694OsAffx.855.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39710OsAffx.8275.1.S1_at7/118+25006012..25009317retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39720NANA8+25013298..25014131retrotransposon protein, putative, unclassified
LOC_Os08g39730Os.14951.1.S1_at10/118+25022315..25024025Cytochrome P450 family protein, expressed
LOC_Os08g39740OsAffx.6086.1.S1_at11/118+25024084..25026892expressed protein
LOC_Os08g39750NANA8+25035915..25037965hypothetical protein
LOC_Os08g39760OsAffx.5954.1.S1_x_at7/118+25039957..25047668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39760OsAffx.5954.4.S1_x_at7/118+25039957..25047668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39760OsAffx.5954.5.S1_x_at6/118+25039957..25047668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39760OsAffx.5954.3.S1_x_at3/118+25039957..25047668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39760OsAffx.5954.2.S1_at1/118+25039957..25047668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39770NANA8+25051394..25053373hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6086.1.S1_at--725--4731Chr08:25024845..25024869 (25 bp)
GCTAAACTTACTCCTACAACCTTAT
LOC_Os08g39740
OsAffx.6086.1.S1_at--818--2631Chr08:25024828..25024852 (25 bp)
AACCTTATCAAGTCACGCTAACCGA
LOC_Os08g39740
OsAffx.6086.1.S1_at--1068--2611Chr08:25024810..25024834 (25 bp)
TAACCGACAAGCACCCGAAGGTAGT
LOC_Os08g39740
OsAffx.6086.1.S1_at--930--7851Chr08:25024791..25024815 (25 bp)
GGTAGTACTGTATCATCTCGAAGCT
LOC_Os08g39740
OsAffx.6086.1.S1_at--406--1451Chr08:25024720..25024744 (25 bp)
AGAAGAACGGGCCACCCAAGTATCT
LOC_Os08g39740
OsAffx.6086.1.S1_at--829--6391Chr08:25024682..25024706 (25 bp)
GATCGTCAGGAGAACTTTGCTTCAT
LOC_Os08g39740
OsAffx.6086.1.S1_at--294--2531Chr08:25024670..25024694 (25 bp)
AACTTTGCTTCATTTGTTGCGCTTC
LOC_Os08g39740
OsAffx.6086.1.S1_at--886--6671Chr08:25024655..25024679 (25 bp)
GTTGCGCTTCGCAACTTGAGCTGGA
LOC_Os08g39740
OsAffx.6086.1.S1_at--831--1171Chr08:25024606..25024630 (25 bp)
AGTACCACTGTGAGGACTTCAGCCG
LOC_Os08g39740
OsAffx.6086.1.S1_at--908--8911Chr08:25024564..25024588 (25 bp)
TGAGCTGCATTGTCTCCATGCTGAA
LOC_Os08g39740
OsAffx.6086.1.S1_at--652--4751Chr08:25024545..25024569 (25 bp)
GCTGAACTGGTCATGGCCATGGGCA
LOC_Os08g39740
Target Sequence 
GCTAAACTTACTCCTACAACCTTATCAAGTCACGCTAACCGACAAGCACCCGAAGGTAGTACTGTATCATCTCGAAGCTC
TGATGAACCAAGCAATGTATCAAGATTTTGAGAACTGCACATTCCAGAAGAACGGGCCACCCAAGTATCTCGACCCAAAA
GAAGATCGTCAGGAGAACTTTGCTTCATTTGTTGCGCTTCGCAACTTGAGCTGGAATGAAGTCTTGAAGAAGGGCACCAA
GTACCACTGTGAGGACTTCAGCCGCTTCTGCGATCAGAAAATGAGCTGCATTGTCTCCATGCTGAACTGGTCATGGCCAT
GGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis