Browse Element(s) Details


Os.14951.1.S1_at

Description gb:AF488522.1
DB_XREF= gi:19849280
GEN=PM-II
TID=Os.14951.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14951 (NCBI UniGene Cluster)
DEF=Oryza sativa Cyt-P450 monooxygenase (PM-II) mRNA, complete cds.
PROD=Cyt-P450 monooxygenase
FL= gb:AF488522.1 gb:AK102040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3973010/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39694Os.5661.1.S1_s_at11/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.51910.1.S1_at10/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.51910.1.S1_x_at10/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.54695.1.S1_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.52051.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.38269.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694OsAffx.855.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39710OsAffx.8275.1.S1_at7/118+25006012..25009317retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39720NANA8+25013298..25014131retrotransposon protein, putative, unclassified
LOC_Os08g39730Os.14951.1.S1_at10/118+25022315..25024025Cytochrome P450 family protein, expressed
LOC_Os08g39740OsAffx.6086.1.S1_at11/118+25024084..25026892expressed protein
LOC_Os08g39750NANA8+25035915..25037965hypothetical protein
LOC_Os08g39760OsAffx.5954.1.S1_x_at7/118+25039957..25047668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39760OsAffx.5954.4.S1_x_at7/118+25039957..25047668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39760OsAffx.5954.5.S1_x_at6/118+25039957..25047668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39760OsAffx.5954.3.S1_x_at3/118+25039957..25047668retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39760OsAffx.5954.2.S1_at1/118+25039957..25047668retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14951.1.S1_at--1053--7971Chr08:25023755..25023779 (25 bp)
GGATGTCAGTGAGAAGTTCACCACA
LOC_Os08g39730
Os.14951.1.S1_at--371--2831Chr08:25023768..25023792 (25 bp)
AAGTTCACCACAGCCAATGTTCTTA
LOC_Os08g39730
Os.14951.1.S1_at--1018--2971Chr08:25023783..25023807 (25 bp)
AATGTTCTTACTGTCCCACTGAAGG
LOC_Os08g39730
Os.14951.1.S1_at--308--4331Chr08:25023814..25023838 (25 bp)
CCATACTTGCCTCTAGTGCTAGTGA
LOC_Os08g39730
Os.14951.1.S1_at--563--4451Chr08:25023822..25023846 (25 bp)
GCCTCTAGTGCTAGTGAACTACAAG
LOC_Os08g39730
Os.14951.1.S1_at--777--8971Chr08:25023836..25023860 (25 bp)
TGAACTACAAGCAAGCTAGCAGGAT
LOC_Os08g39730
Os.14951.1.S1_at--989--2691Chr08:25023848..25023872 (25 bp)
AAGCTAGCAGGATAGCCTACCTCAT
LOC_Os08g39730
Os.14951.1.S1_at--604--6491Chr08:25023858..25023882 (25 bp)
GATAGCCTACCTCATGGCGCATTTG
LOC_Os08g39730
Os.14951.1.S1_at--105--351Chr08:25023925..25023949 (25 bp)
ATAAAGCACAGCTTCGGTGCATATT
LOC_Os08g39730
Os.14951.1.S1_at--790--4911NONE
GCTTCGGTGCATATTTATACTTTTG
NONE
Os.14951.1.S1_at--1103--10191Chr08:25023963..25023987 (25 bp)
TTTGTAATCCTACTTGTTTTTATAT
LOC_Os08g39730
Target Sequence 
GGATGTCAGTGAGAAGTTCACCACAGCCAATGTTCTTACTGTCCCACTGAAGGCCGTCCCCATACTTGCCTCTAGTGCTA
GTGAACTACAAGCAAGCTAGCAGGATAGCCTACCTCATGGCGCATTTGCGGGGCTACATTTAAAGTTTAAATATCGAATA
ATACTATCAAATAAAGCACAGCTTCGGTGCATATTTATACTTTTGTTTCCTTTGTAATCCTACTTGTTTTTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis