Browse Element(s) Details


Os.54170.1.S1_at

Description gb:AK102282.1
DB_XREF= gi:32987491
TID=Os.54170.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54170 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089G06, full insert sequence.
FL= gb:AK102282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2946911/11Dual specificity phosphatase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29409Os.33080.4.S1_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.3.S1_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.4.S1_x_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.2.S1_x_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.1.S1_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29430Os.23675.1.S1_at10/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29430Os.51910.1.S1_at1/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29430Os.51910.1.S1_x_at1/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29450NANA1+16831394..16837809retrotransposon protein, putative, unclassified
LOC_Os01g29469Os.54170.1.S1_at11/111+16838486..16845526Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g29469Os.16993.1.S1_at10/111+16838486..16845526Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g29488OsAffx.2119.1.S1_at11/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9532.1.S1_at5/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9652.1.S1_x_at2/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.9532.1.S1_x_at2/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.52447.1.S1_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.52447.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488OsAffx.20947.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29488Os.54774.1.S1_x_at1/111+16851634..16859548retrotransposon, putative, centromere-specific
LOC_Os01g29507OsAffx.1196.1.S1_at2/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.15647.1.S1_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.31752.1.S1_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.1196.1.S1_x_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507OsAffx.17243.1.S1_at1/111+16867044..16872779hypothetical protein
LOC_Os01g29507Os.10626.4.A1_s_at1/111+16867044..16872779hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008138molecular_functionprotein tyrosine/serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54170.1.S1_at--1016--3091Chr01:16839889..16839913 (25 bp)
AATAGATGTTAGCTTTGACTGTTTT
LOC_Os01g29469
Os.54170.1.S1_at--1090--4871Chr01:16839878..16839902 (25 bp)
GCTTTGACTGTTTTATGATGGTTTT
LOC_Os01g29469
Os.54170.1.S1_at--407--2251Chr01:16839841..16839865 (25 bp)
AAATTCTCAATTTCATTCCACTAGG
LOC_Os01g29469
Os.54170.1.S1_at--50--10571Chr01:16839838..16839862 (25 bp)
TTCTCAATTTCATTCCACTAGGTGA
LOC_Os01g29469
Os.54170.1.S1_at--1157--71Chr01:16839827..16839851 (25 bp)
ATTCCACTAGGTGAGATCACCCTTG
LOC_Os01g29469
Os.54170.1.S1_at--457--6451Chr01:16839813..16839837 (25 bp)
GATCACCCTTGATTAATTACGTGTT
LOC_Os01g29469
Os.54170.1.S1_at--1048--2771Chr01:16839746..16839770 (25 bp)
AAGAGCAGATGTGTGGTGCTTTTTT
LOC_Os01g29469
Os.54170.1.S1_at--1064--10231Chr01:16839718..16839742 (25 bp)
TTTGTCCTACTAACTAACTTCTCTG
LOC_Os01g29469
Os.54170.1.S1_at--769--7251Chr01:16839715..16839739 (25 bp)
GTCCTACTAACTAACTTCTCTGAAT
LOC_Os01g29469
Os.54170.1.S1_at--969--2511Chr01:16839703..16839727 (25 bp)
AACTTCTCTGAATGTCTAGTGTCAC
LOC_Os01g29469
Os.54170.1.S1_at--624--3771Chr01:16839698..16839722 (25 bp)
CTCTGAATGTCTAGTGTCACGATTA
LOC_Os01g29469
Target Sequence 
AATAGATGTTAGCTTTGACTGTTTTATGATGGTTTTCATAATGTGTATAAATTCTCAATTTCATTCCACTAGGTGAGATC
ACCCTTGATTAATTACGTGTTTCTTAATATATAGATATTTTGTAAAGAATATTTGAATTCATTAAGAGCAGATGTGTGGT
GCTTTTTTTCTTTTGTCCTACTAACTAACTTCTCTGAATGTCTAGTGTCACGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis