Browse Element(s) Details


Os.33080.4.S1_x_at

Description gb:NM_189239.1
DB_XREF= gi:34905561
GEN=OJ1123_G09.17
TID=Os.33080.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU056071(S20265)~unknown protein (OJ1123_G09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 4,At4g27340 (OJ1123_G09.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2940911/11Met-10 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29370Os.46995.1.S1_x_at1/111+16788148..16791059retrotransposon protein, putative, unclassified
LOC_Os01g29380NANA1+16791382..16793133retrotransposon protein, putative, unclassified
LOC_Os01g29390Os.54280.1.S1_at11/111+16793722..16806120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29390Os.49801.1.S1_s_at11/111+16793722..16806120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29390Os.10959.1.S2_at1/111+16793722..16806120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29390OsAffx.31479.1.S1_x_at1/111+16793722..16806120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29409Os.33080.4.S1_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.3.S1_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.4.S1_x_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.2.S1_x_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.1.S1_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29430Os.23675.1.S1_at10/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29430Os.51910.1.S1_at1/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29430Os.51910.1.S1_x_at1/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29450NANA1+16831394..16837809retrotransposon protein, putative, unclassified
LOC_Os01g29469Os.54170.1.S1_at11/111+16838486..16845526Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g29469Os.16993.1.S1_at10/111+16838486..16845526Dual specificity phosphatase, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33080.4.S1_x_at--622--7911Chr01:16808033..16808057 (25 bp)
GGTTGCTGCTCCTGGACGAGAACTA
LOC_Os01g29409
Os.33080.4.S1_x_at--644--9311Chr01:16808081..16808592 (25 bp)
TCCCGGAGGCTGTCAAGGTTGTGTT
LOC_Os01g29409
Os.33080.4.S1_x_at--1089--431Chr01:16808617..16808641 (25 bp)
ATCTTCATCCTACGAGCTTGTGCAA
LOC_Os01g29409
Os.33080.4.S1_x_at--278--5191Chr01:16808638..16808662 (25 bp)
GCAATGCCAATTGACCTTGTTCTAC
LOC_Os01g29409
Os.33080.4.S1_x_at--616--5171Chr01:16809541..16809560 (20 bp)
GAATGAGTTCTTCAAAGTCTGTAGA
LOC_Os01g29409
Os.33080.4.S1_x_at--393--2711Chr01:16809574..16809598 (25 bp)
AAGCTTCTCATTTGTGTCAGTATCT
LOC_Os01g29409
Os.33080.4.S1_x_at--737--6331Chr01:16809599..16809623 (25 bp)
GATGCTTCTGTACTGTCCAGGTAAC
LOC_Os01g29409
Os.33080.4.S1_x_at--185--8751Chr01:16809607..16809631 (25 bp)
TGTACTGTCCAGGTAACACTGCCTT
LOC_Os01g29409
Os.33080.4.S1_x_at--480--7651Chr01:16810198..16810222 (25 bp)
GGGATGACCATTTACCTTACAAGAA
LOC_Os01g29409
Os.33080.4.S1_x_at--1149--4711Chr01:16810402..16810426 (25 bp)
GCTGGTATTGATTCCCTTGTAACTA
LOC_Os01g29409
Os.33080.4.S1_x_at--377--2871Chr01:16810437..16810461 (25 bp)
AAGTGGTCTTCGGTTCCAAGTTGAT
LOC_Os01g29409
Target Sequence 
GGTTGCTGCTCCTGGACGAGAACTATGCCAACAAGAGGGTTGATGACCTCCCGGAGGCTGTCAAGGTTGTGTTGGACCAT
GAAACTAACAAGGATGGATCTTCATCCTACGAGCTTGTGCAATGCCAATTGACCTTGTTCTACAATTACTGGCCAATGAA
TGAGTTCTTCAAAGTCTGTAGAATTCTTTCTTTTCAAGCTTCTCATTTGTGTCAGTATCTGATGCTTCTGTACTGTCCAG
GTAACACTGCCTTTGCAAATACCGGATACAGACCAAAAGTTCAGTCTGTACAGATTTTAGAGGAAATACTCCCAGAAGGA
ATAATCGTTCCTACAGGGTTTGAGACAGTAGGGCATATTGCACACTTGAACTTGAGGGATGACCATTTACCTTACAAGAA
GCTTATTGCTCAGGTGGTACTGGACAAAAACAAGCCAAAGATCCAAACTGTTGTCAATAAGATTGATGCTATTCAAAATG
ACTACAGAACAATGCAGCTTGAAGTCTTAGCTGGTATTGATTCCCTTGTAACTACGGTTATTGAAAGTGGTCTTCGGTTC
CAAGTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33080.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis