Browse Element(s) Details


Os.54280.1.S1_at

Description gb:AK103021.1
DB_XREF= gi:32988230
TID=Os.54280.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54280 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116P19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116P19, full insert sequence.
FL= gb:AK103021.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2939011/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29340NANA1+16764361..16768996retrotransposon protein, putative, unclassified
LOC_Os01g29350OsAffx.11253.1.S1_at11/111+16773987..16774567hypothetical protein
LOC_Os01g29370Os.46995.1.S1_x_at1/111+16788148..16791059retrotransposon protein, putative, unclassified
LOC_Os01g29380NANA1+16791382..16793133retrotransposon protein, putative, unclassified
LOC_Os01g29390Os.54280.1.S1_at11/111+16793722..16806120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29390Os.49801.1.S1_s_at11/111+16793722..16806120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29390Os.10959.1.S2_at1/111+16793722..16806120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29390OsAffx.31479.1.S1_x_at1/111+16793722..16806120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29409Os.33080.4.S1_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.3.S1_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.4.S1_x_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.2.S1_x_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29409Os.33080.1.S1_at11/111+16807264..16821200Met-10 family protein, putative, expressed
LOC_Os01g29430Os.23675.1.S1_at10/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29430Os.51910.1.S1_at1/111+16822223..16830195pentatricopeptide, putative, expressed
LOC_Os01g29430Os.51910.1.S1_x_at1/111+16822223..16830195pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54280.1.S1_at--468--3291Chr01:16795618..16795642 (25 bp)
CAAATCTGTATGCTTTGAGGAAGAA
LOC_Os01g29390
Os.54280.1.S1_at--495--31Chr01:16795586..16795610 (25 bp)
ATTGTGTTCCGTGACTCTTTTACAA
LOC_Os01g29390
Os.54280.1.S1_at--882--10831Chr01:16795585..16795609 (25 bp)
TTGTGTTCCGTGACTCTTTTACAAC
LOC_Os01g29390
Os.54280.1.S1_at--718--8671Chr01:16795584..16795608 (25 bp)
TGTGTTCCGTGACTCTTTTACAACT
LOC_Os01g29390
Os.54280.1.S1_at--1060--7391Chr01:16795583..16795607 (25 bp)
GTGTTCCGTGACTCTTTTACAACTG
LOC_Os01g29390
Os.54280.1.S1_at--1124--8791Chr01:16795582..16795606 (25 bp)
TGTTCCGTGACTCTTTTACAACTGA
LOC_Os01g29390
Os.54280.1.S1_at--17--6691Chr01:16795581..16795605 (25 bp)
GTTCCGTGACTCTTTTACAACTGAT
LOC_Os01g29390
Os.54280.1.S1_at--627--5831Chr01:16795554..16795578 (25 bp)
GACCTCGACTCAAAGTTGCGAAAGT
LOC_Os01g29390
Os.54280.1.S1_at--1127--4271Chr01:16795552..16795576 (25 bp)
CCTCGACTCAAAGTTGCGAAAGTAT
LOC_Os01g29390
Os.54280.1.S1_at--58--3891Chr01:16795549..16795573 (25 bp)
CGACTCAAAGTTGCGAAAGTATGAA
LOC_Os01g29390
Os.54280.1.S1_at--1143--9851Chr01:16795539..16795563 (25 bp)
TTGCGAAAGTATGAATAACGTCTTC
LOC_Os01g29390
Target Sequence 
CAAATCTGTATGCTTTGAGGAAGAAGTGGGCTATTGTGTTCCGTGACTCTTTTACAACTGATATGACCTCGACTCAAAGT
TGCGAAAGTATGAATAACGTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis