Browse Element(s) Details


OsAffx.11253.1.S1_at

Description tigr:9629.m02818
TID=OsAffx.11253.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2935011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29300OsAffx.23445.1.S1_at11/111+16749541..16749906hypothetical protein
LOC_Os01g29300OsAffx.23445.1.S1_x_at11/111+16749541..16749906hypothetical protein
LOC_Os01g29310NANA1+16751209..16752267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29320OsAffx.3903.1.S1_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29320OsAffx.30891.1.S1_x_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29320OsAffx.30350.1.S1_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29330Os.23606.1.S1_at11/111+16762724..16763708expressed protein
LOC_Os01g29340NANA1+16764361..16768996retrotransposon protein, putative, unclassified
LOC_Os01g29350OsAffx.11253.1.S1_at11/111+16773987..16774567hypothetical protein
LOC_Os01g29370Os.46995.1.S1_x_at1/111+16788148..16791059retrotransposon protein, putative, unclassified
LOC_Os01g29380NANA1+16791382..16793133retrotransposon protein, putative, unclassified
LOC_Os01g29390Os.54280.1.S1_at11/111+16793722..16806120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29390Os.49801.1.S1_s_at11/111+16793722..16806120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29390Os.10959.1.S2_at1/111+16793722..16806120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29390OsAffx.31479.1.S1_x_at1/111+16793722..16806120retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11253.1.S1_at--195--2091Chr01:16774040..16774064 (25 bp)
ACATAGAAAATGTTGTGCGACAAAA
LOC_Os01g29350
OsAffx.11253.1.S1_at--1019--5511Chr01:16774065..16774089 (25 bp)
GAAAATCCAAGGAATGATCTGACCT
LOC_Os01g29350
OsAffx.11253.1.S1_at--78--952Chr01:16774074..16774098 (25 bp)
AGGAATGATCTGACCTTCATGAACA
LOC_Os01g29350
OsAffx.11253.1.S1_at--455--6411Chr01:16774080..16774104 (25 bp)
GATCTGACCTTCATGAACACTGGAT
LOC_Os01g29350
OsAffx.11253.1.S1_at--48--5851Chr01:16774085..16774109 (25 bp)
GACCTTCATGAACACTGGATGCAAA
LOC_Os01g29350
OsAffx.11253.1.S1_at--1--8971Chr01:16774093..16774117 (25 bp)
TGAACACTGGATGCAAATTGACTGG
LOC_Os01g29350
OsAffx.11253.1.S1_at--398--511Chr01:16774103..16774124 (22 bp)
ATGCAAATTGACTGGGACGACGAAT
LOC_Os01g29350
OsAffx.11253.1.S1_at--1118--11Chr01:16774109..16774513 (25 bp)
ATTGACTGGGACGACGAATCTGAAA
LOC_Os01g29350
OsAffx.11253.1.S1_at--833--5251Chr01:16774504..16774528 (25 bp)
GAATCTGAAACGTCTGTCACGGCGC
LOC_Os01g29350
OsAffx.11253.1.S1_at--761--471Chr01:16774506..16774530 (25 bp)
ATCTGAAACGTCTGTCACGGCGCCT
LOC_Os01g29350
OsAffx.11253.1.S1_at--505--8971Chr01:16774509..16774533 (25 bp)
TGAAACGTCTGTCACGGCGCCTCCT
LOC_Os01g29350
Target Sequence 
ACATAGAAAATGTTGTGCGACAAAAGAAAATCCAAGGAATGATCTGACCTTCATGAACACTGGATGCAAATTGACTGGGA
CGACGAATCTGAAACGTCTGTCACGGCGCCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis