Browse Element(s) Details


Os.23606.1.S1_at

Description gb:AK108444.1
DB_XREF= gi:32993653
TID=Os.23606.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1123_G09.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-C02, full insert sequence.
FL= gb:AK108444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2933011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29270OsAffx.20387.1.S1_x_at2/111+16734636..16740234retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29280Os.37062.1.S1_at11/111+16741909..16742875expressed protein
LOC_Os01g29280Os.37062.2.S1_x_at8/111+16741909..16742875expressed protein
LOC_Os01g29290OsAffx.9772.1.S1_at11/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290Os.27455.1.S1_at3/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290OsAffx.12169.1.S1_x_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290OsAffx.13774.1.S1_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290Os.27455.1.S1_x_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29300OsAffx.23445.1.S1_at11/111+16749541..16749906hypothetical protein
LOC_Os01g29300OsAffx.23445.1.S1_x_at11/111+16749541..16749906hypothetical protein
LOC_Os01g29310NANA1+16751209..16752267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29320OsAffx.3903.1.S1_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29320OsAffx.30891.1.S1_x_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29320OsAffx.30350.1.S1_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29330Os.23606.1.S1_at11/111+16762724..16763708expressed protein
LOC_Os01g29340NANA1+16764361..16768996retrotransposon protein, putative, unclassified
LOC_Os01g29350OsAffx.11253.1.S1_at11/111+16773987..16774567hypothetical protein
LOC_Os01g29370Os.46995.1.S1_x_at1/111+16788148..16791059retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23606.1.S1_at--332--3951Chr01:16763193..16763217 (25 bp)
CGTGTTCAACATGTCCCGGGAAGAG
LOC_Os01g29330
Os.23606.1.S1_at--962--7371Chr01:16763243..16763267 (25 bp)
GTGAGCTAAGACTACGGCCGCTGGA
LOC_Os01g29330
Os.23606.1.S1_at--857--9671Chr01:16763303..16763327 (25 bp)
TCACCGTTGCGTTCAGTGATGTCGG
LOC_Os01g29330
Os.23606.1.S1_at--440--7391Chr01:16763318..16763342 (25 bp)
GTGATGTCGGGCTGCAGAACTGCTT
LOC_Os01g29330
Os.23606.1.S1_at--877--10611Chr01:16763344..16763368 (25 bp)
TTCGGGCAGAATCCTGGCGGCAACA
LOC_Os01g29330
Os.23606.1.S1_at--303--9731Chr01:16763381..16763405 (25 bp)
TCAAGAACCTGCCTCTTGGCATGGC
LOC_Os01g29330
Os.23606.1.S1_at--356--871Chr01:16763401..16763425 (25 bp)
ATGGCGTTCTTGTCGAGCTTCGTCT
LOC_Os01g29330
Os.23606.1.S1_at--882--3651Chr01:16763424..16763448 (25 bp)
CTTCTTGATCTTCCCGACCAAGAGG
LOC_Os01g29330
Os.23606.1.S1_at--679--2611Chr01:16763479..16763503 (25 bp)
AACCGCAAGGCCGAGGATGTAACTA
LOC_Os01g29330
Os.23606.1.S1_at--754--9551Chr01:16763520..16763544 (25 bp)
TCTTATATACGTAGCTAGGTCACAC
LOC_Os01g29330
Os.23606.1.S1_at--270--10091Chr01:16763535..16763559 (25 bp)
TAGGTCACACGTACATGTCTCTCAA
LOC_Os01g29330
Target Sequence 
CGTGTTCAACATGTCCCGGGAAGAGGAGGAANCGAAGAAATTGAGTCACAGTGAGCTAAGACTACGGCCGCTGGACTTCG
TGCACTCCTTCTTCACGGCGATGGTGTTCCTCACCGTTGCGTTCAGTGATGTCGGGCTGCAGAACTGCTTCTTCGGGCAG
AATCCTGGCGGCAACACCAAGGAGCTCCTCAAGAACCTGCCTCTTGGCATGGCGTTCTTGTCGAGCTTCGTCTTCTTGAT
CTTCCCGACCAAGAGGAAGGGCATCGGATACAACGACAATACACCCAACCGCAAGGCCGAGGATGTAACTAAAAATTAAA
TTAAAGCTCTTATATACGTAGCTAGGTCACACGTACATGTCTCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis