Browse Element(s) Details


Os.37062.2.S1_x_at

Description gb:NM_189230.1
DB_XREF= gi:34905543
GEN=OJ1123_G09.4
TID=Os.37062.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome 1, P0043B10.18 (OJ1123_G09.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to Oryza sativa chromosome 1, P0043B10.18 (OJ1123_G09.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g292808/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29240Os.34410.1.S1_at11/111+16719170..16720248expressed protein
LOC_Os01g29250NANA1+16721546..16724631retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g29260Os.25754.2.S1_x_at3/111+16727495..16730459retrotransposon protein, putative, unclassified
LOC_Os01g29270OsAffx.20387.1.S1_x_at2/111+16734636..16740234retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29280Os.37062.1.S1_at11/111+16741909..16742875expressed protein
LOC_Os01g29280Os.37062.2.S1_x_at8/111+16741909..16742875expressed protein
LOC_Os01g29290OsAffx.9772.1.S1_at11/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290Os.27455.1.S1_at3/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290OsAffx.12169.1.S1_x_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290OsAffx.13774.1.S1_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290Os.27455.1.S1_x_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29300OsAffx.23445.1.S1_at11/111+16749541..16749906hypothetical protein
LOC_Os01g29300OsAffx.23445.1.S1_x_at11/111+16749541..16749906hypothetical protein
LOC_Os01g29310NANA1+16751209..16752267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29320OsAffx.3903.1.S1_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29320OsAffx.30891.1.S1_x_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29320OsAffx.30350.1.S1_at1/111+16752649..16756952retrotransposon protein, putative, unclassified
LOC_Os01g29330Os.23606.1.S1_at11/111+16762724..16763708expressed protein
LOC_Os01g29340NANA1+16764361..16768996retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37062.2.S1_x_at--62--8451Chr01:16742238..16742262 (25 bp)
GGCCAGTGCTACAGGTCAAACCGGT
LOC_Os01g29280
Os.37062.2.S1_x_at--490--9411Chr01:16742329..16742353 (25 bp)
TCGTCGGACGCGGTGGCAAGCTATA
LOC_Os01g29280
Os.37062.2.S1_x_at--282--5171Chr01:16742344..16742368 (25 bp)
GCAAGCTATACTACGGCATGGCCAC
LOC_Os01g29280
Os.37062.2.S1_x_at--128--3251Chr01:16742381..16742405 (25 bp)
CAACGTGTTCAATTTGTCCCGGGAG
LOC_Os01g29280
Os.37062.2.S1_x_at--1129--1231Chr01:16742422..16742446 (25 bp)
AGTTGTCGCGCACCAAGCTACGGGA
LOC_Os01g29280
Os.37062.2.S1_x_at--433--1771Chr01:16742505..16742529 (25 bp)
ACCGTGGCATTCAGCGACGTCGGGC
LOC_Os01g29280
Os.37062.2.S1_x_at--754--6211Chr01:16742597..16742621 (25 bp)
GATGGCGTTCATGTCGACGTTCGTC
LOC_Os01g29280
Os.37062.2.S1_x_at--881--3651Chr01:16742621..16742645 (25 bp)
CTTCTTGCTCTTCCCAACGAAAAGG
LOC_Os01g29280
Os.37062.2.S1_x_at--116--8251Chr01:16743624..16743648 (25 bp)
GGCATCAACAAAACCAACTTCTTCG
NONE
Os.37062.2.S1_x_at--383--10631Chr01:16743645..16743669 (25 bp)
TTCGACACGGCTCCAACTGGGAAGA
NONE
Os.37062.2.S1_x_at--507--7611Chr01:16743663..16743687 (25 bp)
GGGAAGAACTTCTGCTCTGGTGTAG
NONE
Target Sequence 
GGCCAGTGCTACAGGTCAAACCGGTGGCTCACCGCTGGTCTCGTCGCCGTCCTCACCGCCTCCTCCATCTTCTTCTCCCT
CACGGACAGCGTCGTCGGACGCGGTGGCAAGCTATACTACGGCATGGCCACGCCGCGGGGGTTCAACGTGTTCAATTTGT
CCCGGGAGGAGGAGGAAGCGCAGGAGTTGTCGCGCACCAAGCTACGGGAGCTGCGGGTGCGGCCGCTGGACATCGTGCAC
GCCTTCTTCACGGCGGTGGTGTTCCTCACCGTGGCATTCAGCGACGTCGGGCTCACCAAGTGCTTCTTCCCCGACGCCGG
CAACGACACCAAGGAGCTGCTCAAGAACCTGCCCCTGGGGATGGCGTTCATGTCGACGTTCGTCTTCTTGCTCTTCCCAA
CGAAAAGGAAGGGCATCGGATACACCGACACCACTCCCCGCATCCTTGATGGCATCAACAAAACCAACTTCTTCGACACG
GCTCCAACTGGGAAGAACTTCTGCTCTGGTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37062.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis