Browse Element(s) Details


Os.34410.1.S1_at

Description gb:AK071508.1
DB_XREF= gi:32981531
TID=Os.34410.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34410 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0008D07.22 (OSJNBb0008D07.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023097E03, full insert sequence.
FL= gb:AK071508.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2924011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29220OsAffx.23444.1.S1_at11/111+16691760..16696723expressed protein
LOC_Os01g29230OsAffx.22743.2.S1_at11/111+16704582..16716582expressed protein
LOC_Os01g29230OsAffx.22743.1.S1_at11/111+16704582..16716582expressed protein
LOC_Os01g29230OsAffx.22743.1.S1_x_at11/111+16704582..16716582expressed protein
LOC_Os01g29240Os.34410.1.S1_at11/111+16719170..16720248expressed protein
LOC_Os01g29250NANA1+16721546..16724631retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g29260Os.25754.2.S1_x_at3/111+16727495..16730459retrotransposon protein, putative, unclassified
LOC_Os01g29270OsAffx.20387.1.S1_x_at2/111+16734636..16740234retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29280Os.37062.1.S1_at11/111+16741909..16742875expressed protein
LOC_Os01g29280Os.37062.2.S1_x_at8/111+16741909..16742875expressed protein
LOC_Os01g29290OsAffx.9772.1.S1_at11/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290Os.27455.1.S1_at3/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290OsAffx.12169.1.S1_x_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290OsAffx.13774.1.S1_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29290Os.27455.1.S1_x_at1/111+16744998..16746495retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34410.1.S1_at--694--8091Chr01:16719640..16719664 (25 bp)
GGACCTGTCCAGGTTCAGGATCACT
LOC_Os01g29240
Os.34410.1.S1_at--25--10531Chr01:16719627..16719651 (25 bp)
TTCAGGATCACTGCGCTCGACTTTG
LOC_Os01g29240
Os.34410.1.S1_at--503--9131Chr01:16719500..16719524 (25 bp)
TGCTGGTGAACCTGCCGCTTGGCGC
LOC_Os01g29240
Os.34410.1.S1_at--12--3991Chr01:16719475..16719499 (25 bp)
CGGGTTCCTGTCCAGCATGGTGTTC
LOC_Os01g29240
Os.34410.1.S1_at--458--5931Chr01:16719427..16719451 (25 bp)
GAGCATAGGCTACACAGACATGACG
LOC_Os01g29240
Os.34410.1.S1_at--459--4371Chr01:16719400..16719424 (25 bp)
CCACTCGCAGTGATGACATTTCATT
LOC_Os01g29240
Os.34410.1.S1_at--440--10331Chr01:16719382..16719406 (25 bp)
TTTCATTCAAATGCATGCAGCCATG
LOC_Os01g29240
Os.34410.1.S1_at--738--8011Chr01:16719358..16719382 (25 bp)
GGAGTGTACACCATCCGTCCCAAAA
LOC_Os01g29240
Os.34410.1.S1_at--81--6451Chr01:16719237..16719261 (25 bp)
GATAATATTTCTCTCCCAAGTACTA
LOC_Os01g29240
Os.34410.1.S1_at--83--4851Chr01:16719192..16719216 (25 bp)
GCTAACAAGCTATATGCATGCAATA
LOC_Os01g29240
Os.34410.1.S1_at--639--5191Chr01:16719173..16719197 (25 bp)
GCAATACATCTAACAAGCCCTTCAA
LOC_Os01g29240
Target Sequence 
GGACCTGTCCAGGTTCAGGATCACTGCGCTCGACTTTGTCCACGCCTTCTTCTCGGCGGTGGTGTTCCTGGCCGTCGCCT
TCGCCGACGCAGCCGTGCAGACGTGCCTCTTCCCGGAAGCAGAAGCGGACATGAGGGAGCTGCTGGTGAACCTGCCGCTT
GGCGCCGGGTTCCTGTCCAGCATGGTGTTCATGATCTTCCCCACCACCAGGAAGAGCATAGGCTACACAGACATGACGCC
CCACTCGCAGTGATGACATTTCATTCAAATGCATGCAGCCATGGAGTGTACACCATCCGTCCCAAAATAAATTAAATCCT
ATGTACAAATCTAGATGTAGTAATATTATCTAGAATCGTAATTAGGATTTAATTCTTTTTTGAGATGGAGGGAGTATATA
TAGGATAATATTTCTCTCCCAAGTACTACAGAATGTTCTAATTAACAAGCTAACAAGCTATATGCATGCAATACATCTAA
CAAGCCCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis