Browse Element(s) Details


OsAffx.23444.1.S1_at

Description tigr:9629.m02805
TID=OsAffx.23444.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2922011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29160NANA1+16666091..16667034retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29170OsAffx.21754.1.S1_x_at1/111+16669267..16670626retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29180Os.6680.1.S1_at10/111+16674057..16676335expressed protein
LOC_Os01g29180OsAffx.23443.1.S1_at9/111+16674057..16676335expressed protein
LOC_Os01g29180OsAffx.28294.2.S1_at1/111+16674057..16676335expressed protein
LOC_Os01g29190OsAffx.10525.1.S1_at11/111+16683629..16685013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29200OsAffx.21269.1.S1_x_at1/111+16688497..16688802retrotransposon protein, putative, unclassified
LOC_Os01g29210OsAffx.2118.1.S1_at11/111+16690543..16691112hypothetical protein
LOC_Os01g29220OsAffx.23444.1.S1_at11/111+16691760..16696723expressed protein
LOC_Os01g29230OsAffx.22743.2.S1_at11/111+16704582..16716582expressed protein
LOC_Os01g29230OsAffx.22743.1.S1_at11/111+16704582..16716582expressed protein
LOC_Os01g29230OsAffx.22743.1.S1_x_at11/111+16704582..16716582expressed protein
LOC_Os01g29240Os.34410.1.S1_at11/111+16719170..16720248expressed protein
LOC_Os01g29250NANA1+16721546..16724631retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23444.1.S1_at--1135--9271Chr01:16693572..16693591 (20 bp)
TCCTGGCAGCTTCCTTACTTGATTG
LOC_Os01g29220
OsAffx.23444.1.S1_at--621--5191Chr01:16693629..16693653 (25 bp)
GCAATTCGGTTTGTAGCTCCAAGGA
LOC_Os01g29220
OsAffx.23444.1.S1_at--681--6771Chr01:16694543..16694567 (25 bp)
GTTACATTTCATCTAATCTGGTGCA
LOC_Os01g29220
OsAffx.23444.1.S1_at--774--4611Chr01:16695081..16695102 (22 bp)
GCGAGTTTGTATCACTGGGCATTAT
LOC_Os01g29220
OsAffx.23444.1.S1_at--406--9751Chr01:16695133..16695157 (25 bp)
TAAAATGCACCGCTAGTACCGCAAC
LOC_Os01g29220
OsAffx.23444.1.S1_at--265--111Chr01:16696130..16696154 (25 bp)
ATTCGGTTTTCATCATTCTTCTGCT
LOC_Os01g29220
OsAffx.23444.1.S1_at--1098--10591Chr01:16696148..16696172 (25 bp)
TTCTGCTTTATGTCTACCAACTACC
LOC_Os01g29220
OsAffx.23444.1.S1_at--863--5331Chr01:16696176..16696200 (25 bp)
GAAGTTTCCATATGTCGTTCTAGCA
LOC_Os01g29220
OsAffx.23444.1.S1_at--758--4951Chr01:16696198..16696222 (25 bp)
GCATTTGCTGACTTCATTGGCCTAT
LOC_Os01g29220
OsAffx.23444.1.S1_at--1085--171Chr01:16696228..16696252 (25 bp)
ATTTCGTCGAACTCAGAATGGCCTG
LOC_Os01g29220
OsAffx.23444.1.S1_at--1053--5271Chr01:16696243..16696267 (25 bp)
GAATGGCCTGAGGTGTCTTCTGGTA
LOC_Os01g29220
Target Sequence 
TCCTGGCAGCTTCCTTACTTGATTGGAGCTTAATTTCTCTGGTCAATATGATATTTTTCTTTGCAATTCGGTTTGTAGCT
CCAAGGAGAGTACTTGCTAGTTTAGCACAAGTTACATTTCATCTAATCTGGTGCATTGAGGGAGAGGGATGGGTTGTGGC
CCATTCCTGGTGGGCAAAGTTGGTTGGTTTTGCGAGTTTGTATCACTGGGCATTATTGTTGGTTCTTGTGGATATAGTTT
ATCGAGTAAAATGCACCGCTAGTACCGCAACTTGTGAGCAATGTGCATTTGGTAATATTTGTGAAATTGTATATGTTATC
TTCCGAAGATGGTGGAGATTACTTGAGATATATTCGGTTTTCATCATTCTTCTGCTTTATGTCTACCAACTACCTGTGAA
GTTTCCATATGTCGTTCTAGCATTTGCTGACTTCATTGGCCTATTCAAAATTTCGTCGAACTCAGAATGGCCTGAGGTGT
CTTCTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis