Browse Element(s) Details


OsAffx.22743.2.S1_at

Description tigr:9629.m02806
TID=OsAffx.22743.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2923011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29190OsAffx.10525.1.S1_at11/111+16683629..16685013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29200OsAffx.21269.1.S1_x_at1/111+16688497..16688802retrotransposon protein, putative, unclassified
LOC_Os01g29210OsAffx.2118.1.S1_at11/111+16690543..16691112hypothetical protein
LOC_Os01g29220OsAffx.23444.1.S1_at11/111+16691760..16696723expressed protein
LOC_Os01g29230OsAffx.22743.2.S1_at11/111+16704582..16716582expressed protein
LOC_Os01g29230OsAffx.22743.1.S1_at11/111+16704582..16716582expressed protein
LOC_Os01g29230OsAffx.22743.1.S1_x_at11/111+16704582..16716582expressed protein
LOC_Os01g29240Os.34410.1.S1_at11/111+16719170..16720248expressed protein
LOC_Os01g29250NANA1+16721546..16724631retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g29260Os.25754.2.S1_x_at3/111+16727495..16730459retrotransposon protein, putative, unclassified
LOC_Os01g29270OsAffx.20387.1.S1_x_at2/111+16734636..16740234retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22743.2.S1_at--148--7071Chr01:16712981..16713005 (25 bp)
GTAAGTGGCGAACTGCTCTTGAATA
LOC_Os01g29230
OsAffx.22743.2.S1_at--956--4811Chr01:16712995..16713019 (25 bp)
GCTCTTGAATAATGGCACTCCTCCT
LOC_Os01g29230
OsAffx.22743.2.S1_at--300--9271Chr01:16713013..16713037 (25 bp)
TCCTCCTTGGTGGTCATTCTATGAT
LOC_Os01g29230
OsAffx.22743.2.S1_at--628--2611Chr01:16713041..16713065 (25 bp)
AACCCATCAGATTTGGCTGGCTGTC
LOC_Os01g29230
OsAffx.22743.2.S1_at--714--4731Chr01:16713060..16713084 (25 bp)
GCTGTCAAGGCCTTAATGGTCCCAT
LOC_Os01g29230
OsAffx.22743.2.S1_at--932--3491Chr01:16713082..16713106 (25 bp)
CATGGCCATCGTTGTGTCTGAGGAA
LOC_Os01g29230
OsAffx.22743.2.S1_at--487--3591Chr01:16714345..16714369 (25 bp)
CATTACCTTTGTGTTAGCTGTTGCA
LOC_Os01g29230
OsAffx.22743.2.S1_at--1014--5951Chr01:16714418..16714442 (25 bp)
GAGAATCTTCCATCTTGTGACAGGT
LOC_Os01g29230
OsAffx.22743.2.S1_at--514--2131Chr01:16716330..16716354 (25 bp)
ACAGGTCACCTCATATGCTGCTTGA
LOC_Os01g29230
OsAffx.22743.2.S1_at--494--2651Chr01:16716362..16716386 (25 bp)
AAGCCAGACTAGTATATCACCAGTT
LOC_Os01g29230
OsAffx.22743.2.S1_at--576--371Chr01:16716377..16716401 (25 bp)
ATCACCAGTTTTGCTAATGGCGTAG
LOC_Os01g29230
Target Sequence 
GTAAGTGGCGAACTGCTCTTGAATAATGGCACTCCTCCTTGGTGGTCATTCTATGATACAAACCCATCAGATTTGGCTGG
CTGTCAAGGCCTTAATGGTCCCATGGCCATCGTTGTGTCTGAGGAAACACCTCAGGGTATTATTGGTGAAACACTGAGCA
AATTCAGCATTTGGAGTTTGTACATTACCTTTGTGTTAGCTGTTGCAAGATTTATTAGACTGCAATGCTCAGATCTGAGA
ATGAGAATACCTTATGAGAATCTTCCATCTTGTGACAGGTTACTTGACATCTGTGAAGGCATTTATGCAGCACGAGCAGA
GGGTGAGTTAGAAGTGGAAGAAGTTCTATATTGGACATTGGTAAATATATACAGGTCACCTCATATGCTGCTTGAGTATA
CCAAGCCAGACTAGTATATCACCAGTTTTGCTAATGGCGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22743.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis