Browse Element(s) Details


OsAffx.22743.1.S1_x_at

Description gb:NM_184584.1
DB_XREF= gi:34896257
GEN=OSJNBb0008D07.21
TID=OsAffx.22743.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0008D07.21 (OSJNBb0008D07.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2923011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29190OsAffx.10525.1.S1_at11/111+16683629..16685013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29200OsAffx.21269.1.S1_x_at1/111+16688497..16688802retrotransposon protein, putative, unclassified
LOC_Os01g29210OsAffx.2118.1.S1_at11/111+16690543..16691112hypothetical protein
LOC_Os01g29220OsAffx.23444.1.S1_at11/111+16691760..16696723expressed protein
LOC_Os01g29230OsAffx.22743.2.S1_at11/111+16704582..16716582expressed protein
LOC_Os01g29230OsAffx.22743.1.S1_at11/111+16704582..16716582expressed protein
LOC_Os01g29230OsAffx.22743.1.S1_x_at11/111+16704582..16716582expressed protein
LOC_Os01g29240Os.34410.1.S1_at11/111+16719170..16720248expressed protein
LOC_Os01g29250NANA1+16721546..16724631retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g29260Os.25754.2.S1_x_at3/111+16727495..16730459retrotransposon protein, putative, unclassified
LOC_Os01g29270OsAffx.20387.1.S1_x_at2/111+16734636..16740234retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22743.1.S1_x_at--687--6871Chr01:16709821..16709845 (25 bp)
GTATTCTTTCTTGTTGCCATGTTCT
LOC_Os01g29230
OsAffx.22743.1.S1_x_at--587--4431Chr01:16709836..16709860 (25 bp)
GCCATGTTCTATCAATCTGTTCTTA
LOC_Os01g29230
OsAffx.22743.1.S1_x_at--926--1711Chr01:16709888..16709912 (25 bp)
ACCAGCTGGAGGATCAGTTTCCCAA
LOC_Os01g29230
OsAffx.22743.1.S1_x_at--354--6391Chr01:16710082..16710106 (25 bp)
GATCGCATCATATATCTGTGGTCAT
LOC_Os01g29230
OsAffx.22743.1.S1_x_at--973--1151Chr01:16710120..16710144 (25 bp)
AGTCATTTTCTATCTTTTCAACCTA
LOC_Os01g29230
OsAffx.22743.1.S1_x_at--941--9071Chr01:16710146..16710170 (25 bp)
TGCTTTTCACATACTCTGTCACTGA
LOC_Os01g29230
OsAffx.22743.1.S1_x_at--638--6731Chr01:16710217..16710241 (25 bp)
GTTCTACGTGCAATCTATCTTACAA
LOC_Os01g29230
OsAffx.22743.1.S1_x_at--1146--2311Chr01:16710240..16710264 (25 bp)
AAAGTCGATTTCCTTGGCACTTCAA
LOC_Os01g29230
OsAffx.22743.1.S1_x_at--112--3831Chr01:16710373..16710397 (25 bp)
CTGCCCTTCTTGTATGAGCTGCGGT
LOC_Os01g29230
OsAffx.22743.1.S1_x_at--104--7851Chr01:16710453..16710477 (25 bp)
GGTACATCTATACTTGATCTTCCCC
LOC_Os01g29230
OsAffx.22743.1.S1_x_at--690--3631Chr01:16710471..16710495 (25 bp)
CTTCCCCAAACTATCATGGTTGTTT
LOC_Os01g29230
Target Sequence 
GTATTCTTTCTTGTTGCCATGTTCTATCAATCTGTTCTTAAAAACAAAAGTGAATTTCTGGAAGTTTACCAGCTGGAGGA
TCAGTTTCCCAAAGAGTTTGTTTTCATCCTAATGATTCTCTTTTTCTTGATTGTGGTTGATCGCATCATATATCTGTGGT
CATTTGCCACAGGAAAAGTCATTTTCTATCTTTTCAACCTAGTGCTTTTCACATACTCTGTCACTGAATATGCTTGGGGA
ATGGAGCTAGTGCACAGAAATGTTGGAGGATTTGTTCTACGTGCAATCTATCTTACAAAGTCGATTTCCTTGGCACTTCA
AGCTTTACAGATTAGATATGGTATTCCCAACAAGAGTAACTTGTATCGACAGTTTTTGACAAGCAAAGTTACACAAGTAA
ATTATTTTGGTTTCCGGCTTTACCGTGCTCTGCCCTTCTTGTATGAGCTGCGGTGTGTGCTTGATTGGTCATGTACAACT
ACATCATTAACAATGTATGATTGGCTTAAGGTACATCTATACTTGATCTTCCCCAAACTATCATGGTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22743.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis