Browse Element(s) Details


Os.6680.1.S1_at

Description gb:AK063630.1
DB_XREF= gi:32973648
TID=Os.6680.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6680 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-F08, full insert sequence.
FL= gb:AK063630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2918010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29150Os.17265.2.S1_x_at11/111+16652726..16655240Cytochrome P450 family protein, expressed
LOC_Os01g29160NANA1+16666091..16667034retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29170OsAffx.21754.1.S1_x_at1/111+16669267..16670626retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29180Os.6680.1.S1_at10/111+16674057..16676335expressed protein
LOC_Os01g29180OsAffx.23443.1.S1_at9/111+16674057..16676335expressed protein
LOC_Os01g29180OsAffx.28294.2.S1_at1/111+16674057..16676335expressed protein
LOC_Os01g29190OsAffx.10525.1.S1_at11/111+16683629..16685013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g29200OsAffx.21269.1.S1_x_at1/111+16688497..16688802retrotransposon protein, putative, unclassified
LOC_Os01g29210OsAffx.2118.1.S1_at11/111+16690543..16691112hypothetical protein
LOC_Os01g29220OsAffx.23444.1.S1_at11/111+16691760..16696723expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6680.1.S1_at--672--4711Chr01:16675681..16675705 (25 bp)
GCTGGTGATCGCTGGACGTCGCCTC
LOC_Os01g29180
Os.6680.1.S1_at--371--10691NONE
TTGCCGCCCAGGTCACAAATCTAGG
NONE
Os.6680.1.S1_at--193--1811Chr01:16674658..16674682 (25 bp)
ACCCCTCTAATCGTTATGCAATTGC
LOC_Os01g29180
Os.6680.1.S1_at--1042--3152Chr06:21072282..21072306 (25 bp)
AATTGATTGGTTTATGCCTATTCGT
NONE
Os.6680.1.S1_at--196--591Chr01:16674612..16674636 (25 bp)
ATGCCTATTCGTTGCGGAGTTCAAT
LOC_Os01g29180
Os.6680.1.S1_at--103--6632Chr06:21072172..21072193 (22 bp)
GTTGTGTAAACCGTGTGAAATCTAT
NONE
Os.6680.1.S1_at--377--5591Chr01:16674519..16674543 (25 bp)
GAAATCTATATTGCCAGTGAGGTTT
LOC_Os01g29180
Os.6680.1.S1_at--747--7731Chr01:16674481..16674505 (25 bp)
GGTGGTTTGGTCTGAAAATGCTTCT
LOC_Os01g29180
Os.6680.1.S1_at--329--632Chr01:16674464..16674488 (25 bp)
ATGCTTCTAGTCTAAACCAAGTCTA
LOC_Os01g29180
Os.6680.1.S1_at--770--6953Chr05:7818877..7818901 (25 bp)
GTAGACTGTCACTGTTGTTGATTTG
NONE
Os.6680.1.S1_at--1125--10412Chr05:7818725..7818844 (25 bp)
TTATATTTGCTGTTGATTTCCTTTT
NONE
Target Sequence 
GCTGGTGATCGCTGGACGTCGCCTCCATCACCCCCTCTGCCAGCGACCGACATCCTTGACTCGCCGTCACTCCCAGCCTT
TGCCGCCCAGGTCACAAATCTAGGTTCACTAAACCCAAAGGCTTTTGTAGCAATGGGATGGCTGGTGCTAGTGGTTACTT
GGGCAGCTATGGGGGTGATGGTGGGTATGGCAGTACACCAGGAGCCTAGGAAGAAAATACATGGTCAATAGGTAAGATAT
ATGGTAAGTTCAATTCCCACACCCCTCTAATCGTTATGCAATTGCTGGTTGTAAATTGATTGGTTTATGCCTATTCGTTG
CGGAGTTCAATTATGTTTAGTTTGTGTTTAATATTGATATTGATGTGTGAGTGCTTATGANTTGTTGTGTAAACCGTGTG
AAATCTATATTGCCAGTGAGGTTTGTTGGCCCAATTTGGTGGTTTGGTCTGAAAATGCTTCTAGTCTAAACCAAGTCTAA
ATCAGTAGTAGACTGTCACTGTTGTTGATTTGAGAGTATTTATATTTGCTGTTGATTTCCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis