Browse Element(s) Details


Os.17265.2.S1_x_at

Description gb:NM_184579.1
DB_XREF= gi:34896247
GEN=OSJNBb0008D07.14
TID=Os.17265.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17265 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0008D07.14 (OSJNBb0008D07.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0008D07.14 (OSJNBb0008D07.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2915011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29110NANA1+16633378..16636648retrotransposon, putative, centromere-specific
LOC_Os01g29120NANA1+16638118..16638819retrotransposon, putative, centromere-specific
LOC_Os01g29130OsAffx.11252.1.S1_at11/111+16639649..16640294hypothetical protein
LOC_Os01g29130Os.17546.2.S1_x_at1/111+16639649..16640294hypothetical protein
LOC_Os01g29140OsAffx.10527.1.S1_at10/111+16643763..16644948hypothetical protein
LOC_Os01g29150Os.17265.2.S1_x_at11/111+16652726..16655240Cytochrome P450 family protein, expressed
LOC_Os01g29160NANA1+16666091..16667034retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29170OsAffx.21754.1.S1_x_at1/111+16669267..16670626retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29180Os.6680.1.S1_at10/111+16674057..16676335expressed protein
LOC_Os01g29180OsAffx.23443.1.S1_at9/111+16674057..16676335expressed protein
LOC_Os01g29180OsAffx.28294.2.S1_at1/111+16674057..16676335expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0016131biological_processbrassinosteroid metabolism
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17265.2.S1_x_at--1019--791Chr01:16653377..16653401 (25 bp)
ATGGGCCATCGTCGTACTCGCCATG
LOC_Os01g29150
Os.17265.2.S1_x_at--536--8031Chr01:16653347..16653371 (25 bp)
GGAGTGGCAGGAGCGCGCTCGCCAA
LOC_Os01g29150
Os.17265.2.S1_x_at--743--10691Chr01:16653195..16653297 (25 bp)
TTGCCAAGCTCAAAACGCTCGGGAT
LOC_Os01g29150
Os.17265.2.S1_x_at--130--2691Chr01:16653190..16653292 (25 bp)
AAGCTCAAAACGCTCGGGATGATCC
LOC_Os01g29150
Os.17265.2.S1_x_at--341--5911Chr01:16653100..16653124 (25 bp)
GAGCTCGGCGGTTACCTGCGGATCC
LOC_Os01g29150
Os.17265.2.S1_x_at--197--8091Chr01:16653065..16653089 (25 bp)
GGAGCTGCTGATCCCAATCATGGCC
LOC_Os01g29150
Os.17265.2.S1_x_at--915--8351Chr01:16652945..16652969 (25 bp)
GGCGTTCATACCGTTCGGCCTTGGG
LOC_Os01g29150
Os.17265.2.S1_x_at--81--3991Chr01:16652906..16652930 (25 bp)
CGGGCAGAACCTCGCCATCCTGGAG
LOC_Os01g29150
Os.17265.2.S1_x_at--43--911Chr01:16652883..16652907 (25 bp)
AGGCGAAGCTGACCGTCGCCGTCAT
LOC_Os01g29150
Os.17265.2.S1_x_at--107--7111Chr01:16652863..16652887 (25 bp)
GTCATCCTGCATCGGTTCGAGTTCC
LOC_Os01g29150
Os.17265.2.S1_x_at--618--9371Chr01:16652847..16652871 (25 bp)
TCGAGTTCCGGTTGTCGGCCAGATA
LOC_Os01g29150
Target Sequence 
ATGGGCCATCGTCGTACTCGCCATGCACCCGGAGTGGCAGGAGCGCGCTCGCCAAGAGGTCCTCGACGTCTGCGGCGCTG
ACGGCGTCCCCTCTCGCGAGCAGCTTGCCAAGCTCAAAACGCTCGGGATGATCCTGAACGAGACGCTGCGGCTGTACCCG
CCGGCGGTGGCGACGGTGCGGCGCGCCAAGGCGGACGTGGAGCTCGGCGGTTACCTGCGGATCCCACGCGACACGGAGCT
GCTGATCCCAATCATGGCCGTGCACCACGACGCGCGGCTGTGGGGGCCCGACGCGGCGCAGTTCAACCCGGCGCGGTTCG
CCGGAGGCGTGGCCCGGGCGGCGAGGCACCCGGCGGCGTTCATACCGTTCGGCCTTGGGGCACGGATGTGCATCGGGCAG
AACCTCGCCATCCTGGAGGCGAAGCTGACCGTCGCCGTCATCCTGCATCGGTTCGAGTTCCGGTTGTCGGCCAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17265.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis