Browse Element(s) Details


OsAffx.11252.1.S1_at

Description tigr:9629.m02796
TID=OsAffx.11252.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2913011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29100OsAffx.23442.1.S1_at11/111+16612788..16615501retrotransposon protein, putative, unclassified
LOC_Os01g29110NANA1+16633378..16636648retrotransposon, putative, centromere-specific
LOC_Os01g29120NANA1+16638118..16638819retrotransposon, putative, centromere-specific
LOC_Os01g29130OsAffx.11252.1.S1_at11/111+16639649..16640294hypothetical protein
LOC_Os01g29130Os.17546.2.S1_x_at1/111+16639649..16640294hypothetical protein
LOC_Os01g29140OsAffx.10527.1.S1_at10/111+16643763..16644948hypothetical protein
LOC_Os01g29150Os.17265.2.S1_x_at11/111+16652726..16655240Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11252.1.S1_at--567--1471Chr01:16640233..16640257 (25 bp)
AGAATCGCGCGGGTACCTCACAGAG
LOC_Os01g29130
OsAffx.11252.1.S1_at--930--5251Chr01:16640232..16640256 (25 bp)
GAATCGCGCGGGTACCTCACAGAGC
LOC_Os01g29130
OsAffx.11252.1.S1_at--686--1751Chr01:16640219..16640243 (25 bp)
ACCTCACAGAGCCAAAGACCTCTTG
LOC_Os01g29130
OsAffx.11252.1.S1_at--1142--3731Chr01:16640217..16640241 (25 bp)
CTCACAGAGCCAAAGACCTCTTGGG
LOC_Os01g29130
OsAffx.11252.1.S1_at--940--9691Chr01:16640216..16640240 (25 bp)
TCACAGAGCCAAAGACCTCTTGGGC
LOC_Os01g29130
OsAffx.11252.1.S1_at--89--2153Chr08:12558240..12558263 (24 bp)
ACAGAGCCAAAGACCTCTTGGGCGA
NONE
OsAffx.11252.1.S1_at--580--3413Chr08:12558239..12558263 (25 bp)
CAGAGCCAAAGACCTCTTGGGCGAA
NONE
OsAffx.11252.1.S1_at--518--1373Chr08:12558238..12558262 (25 bp)
AGAGCCAAAGACCTCTTGGGCGAAG
NONE
OsAffx.11252.1.S1_at--1107--5853Chr08:12558237..12558261 (25 bp)
GAGCCAAAGACCTCTTGGGCGAAGG
NONE
OsAffx.11252.1.S1_at--805--8631Chr01:16639775..16640220 (25 bp)
TGGGCGAAGGGTGCACTGGCAACCC
LOC_Os01g29130
OsAffx.11252.1.S1_at--694--8371Chr01:16639773..16640218 (25 bp)
GGCGAAGGGTGCACTGGCAACCCGC
LOC_Os01g29130
Target Sequence 
AGAATCGCGCGGGTACCTCACAGAGCCAAAGACCTCTTGGGCGAAGGGTGCACTGGCAACCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis