Browse Element(s) Details


OsAffx.15647.1.S1_at

Description tigr:9634.m02732
TID=OsAffx.15647.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2857011/11hypothetical protein
LOC_Os01g295071/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28530Os.27088.1.A1_x_at9/116+16234166..16236118retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g28530Os.46012.2.S1_x_at3/116+16234166..16236118retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g28540NANA6+16240812..16242447hypothetical protein
LOC_Os06g28550Os.56372.1.S1_at11/116+16243362..16246114Isoflavone reductase homolog, putative, expressed
LOC_Os06g28550Os.45902.1.A1_x_at1/116+16243362..16246114Isoflavone reductase homolog, putative, expressed
LOC_Os06g28560OsAffx.15646.1.S1_at11/116+16250106..16251884hypothetical protein
LOC_Os06g28570OsAffx.15647.1.S1_at11/116+16253841..16254297hypothetical protein
LOC_Os06g28580OsAffx.15648.1.S1_at11/116+16255368..16256590hypothetical protein
LOC_Os06g28590Os.52358.1.S1_at11/116+16263258..16269838U-box domain containing protein, expressed
LOC_Os06g28600OsAffx.27853.1.S1_at11/116+16275334..16277038hypothetical protein
LOC_Os06g28610NANA6+16278723..16279220hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15647.1.S1_at--1076--371Chr06:16254238..16254262 (25 bp)
ATCAAATTCTCGATCAAGCCGTCAC
LOC_Os06g28570
OsAffx.15647.1.S1_at--332--9671Chr06:16254217..16254241 (25 bp)
TCACCAAGACGAGTCAAGCACACGT
LOC_Os06g28570
OsAffx.15647.1.S1_at--585--3231Chr06:16254203..16254227 (25 bp)
CAAGCACACGTTCGTCGACTGATGT
LOC_Os06g28570
OsAffx.15647.1.S1_at--754--4012Chr01:16870603..16870738 (25 bp)
CGTCGACTGATGTTTCGATGGAGGA
LOC_Os01g29507
OsAffx.15647.1.S1_at--328--8811Chr06:16254160..16254184 (25 bp)
TGTTCCGCCAAGACTCCTTCATGAT
LOC_Os06g28570
OsAffx.15647.1.S1_at--853--2751Chr06:16254151..16254175 (25 bp)
AAGACTCCTTCATGATTCCGACCTC
LOC_Os06g28570
OsAffx.15647.1.S1_at--493--5831Chr06:16254132..16254156 (25 bp)
GACCTCGACCTCGTAGGTGACCGAG
LOC_Os06g28570
OsAffx.15647.1.S1_at--1117--4931Chr06:16254057..16254081 (25 bp)
GCATACGACCTCAAACTACTTCGGA
LOC_Os06g28570
OsAffx.15647.1.S1_at--422--2011Chr06:16253949..16254067 (25 bp)
ACTACTTCGGAAGATAGATGCAGAC
LOC_Os06g28570
OsAffx.15647.1.S1_at--21--1311Chr06:16253934..16253958 (25 bp)
AGATGCAGACGATGGTATTTCTTTT
LOC_Os06g28570
OsAffx.15647.1.S1_at--129--6091Chr06:16253894..16253918 (25 bp)
GAGTATCATCTTTCTCTGATCGACA
LOC_Os06g28570
Target Sequence 
ATCAAATTCTCGATCAAGCCGTCACCAAGACGAGTCAAGCACACGTTCGTCGACTGATGTTTCGATGGAGGATGCGAATG
TTCCGCCAAGACTCCTTCATGATTCCGACCTCGACCTCGTAGGTGACCGAGAGATGCAAGCCTACCATATGCTCAAGGAT
AGGACGTTTGCTCACACCCAAGCATACGACCTCAAACTACTTCGGAAGATAGATGCAGACGATGGTATTTCTTTTCGGTT
TTTCCGTAAGGAGTATCATCTTTCTCTGATCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis