Browse Element(s) Details


Os.52358.1.S1_at

Description gb:AK066627.1
DB_XREF= gi:32976645
TID=Os.52358.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072C11, full insert sequence.
FL= gb:AK066627.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2859011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28540NANA6+16240812..16242447hypothetical protein
LOC_Os06g28550Os.56372.1.S1_at11/116+16243362..16246114Isoflavone reductase homolog, putative, expressed
LOC_Os06g28550Os.45902.1.A1_x_at1/116+16243362..16246114Isoflavone reductase homolog, putative, expressed
LOC_Os06g28560OsAffx.15646.1.S1_at11/116+16250106..16251884hypothetical protein
LOC_Os06g28570OsAffx.15647.1.S1_at11/116+16253841..16254297hypothetical protein
LOC_Os06g28580OsAffx.15648.1.S1_at11/116+16255368..16256590hypothetical protein
LOC_Os06g28590Os.52358.1.S1_at11/116+16263258..16269838U-box domain containing protein, expressed
LOC_Os06g28600OsAffx.27853.1.S1_at11/116+16275334..16277038hypothetical protein
LOC_Os06g28610NANA6+16278723..16279220hypothetical protein
LOC_Os06g28620NANA6+16281070..16281570retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52358.1.S1_at--713--2671Chr06:16263823..16263847 (25 bp)
AAGCGACCAGTTTGGCAATTCATGT
LOC_Os06g28590
Os.52358.1.S1_at--803--7771Chr06:16263777..16263801 (25 bp)
GGTGCAGCAGAGAATTCGCCCATTG
LOC_Os06g28590
Os.52358.1.S1_at--566--4531Chr06:16263760..16263784 (25 bp)
GCCCATTGGCACGATCTGCAAACAA
LOC_Os06g28590
Os.52358.1.S1_at--422--171Chr06:16263693..16263717 (25 bp)
ATTTTCTCGAAACCTCGATCGCTGA
LOC_Os06g28590
Os.52358.1.S1_at--487--9151Chr06:16263611..16263635 (25 bp)
TGCCCAACCAGCTGGTGTACAGTTT
LOC_Os06g28590
Os.52358.1.S1_at--329--7971Chr06:16263550..16263574 (25 bp)
GGATGTTTTTTCAACCCCATGTACT
LOC_Os06g28590
Os.52358.1.S1_at--821--1791Chr06:16263537..16263561 (25 bp)
ACCCCATGTACTAGTGTTTCTTCTA
LOC_Os06g28590
Os.52358.1.S1_at--1148--4991Chr06:16263500..16263524 (25 bp)
GCAGTACTTTTGCTTTTCTTTACTA
LOC_Os06g28590
Os.52358.1.S1_at--555--6671Chr06:16263429..16263453 (25 bp)
GTTGCATTTTATTCTCTGCTGTTGC
LOC_Os06g28590
Os.52358.1.S1_at--499--8271Chr06:16263381..16263405 (25 bp)
GGCAGGCAGCACATGTCAGTCTGAA
LOC_Os06g28590
Os.52358.1.S1_at--908--2471Chr06:16263350..16263374 (25 bp)
AACACCTTTGATAATATGGCGTCTT
LOC_Os06g28590
Target Sequence 
AAGCGACCAGTTTGGCAATTCATGTTCNAGTGAGGTGGCTGTCAATGGTGCAGCAGAGAATTCGCCCATTGGCACGATCT
GCAAACAACCAATATCAAAATCAGCTCNGGTATATCTCAAGAAAGCTCAGCATTTTCTCGAAACCTCGATCGCTGACCCT
CGTCTGATGAGTCGAGTTTGATTTTGGTTGGAGCTTTGTACATTTTCAAACACTGCCCAACCAGCTGGTGTACAGTTTGT
AGCAGATAGTAGTGTCCAGATGAAATGCTTGATGGGATGTTTTTTCAACCCCATGTACTAGTGTTTCTTCTAGAGTTTGT
ATTTGCAGTACTTTTGCTTTTCTTTACTAGGTTGTTTTAGATAAAGACATACGGTGAACAGGTTTTATGTCGAAAGTTGC
ATTTTATTCTCTGCTGTTGCATATACAGTTGAAAATCTGAAGGGGCAGGCAGCACATGTCAGTCTGAAGGATGCAACACC
TTTGATAATATGGCGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis