Browse Element(s) Details


OsAffx.27853.1.S1_at

Description tigr:9634.m02735
TID=OsAffx.27853.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2860011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28560OsAffx.15646.1.S1_at11/116+16250106..16251884hypothetical protein
LOC_Os06g28570OsAffx.15647.1.S1_at11/116+16253841..16254297hypothetical protein
LOC_Os06g28580OsAffx.15648.1.S1_at11/116+16255368..16256590hypothetical protein
LOC_Os06g28590Os.52358.1.S1_at11/116+16263258..16269838U-box domain containing protein, expressed
LOC_Os06g28600OsAffx.27853.1.S1_at11/116+16275334..16277038hypothetical protein
LOC_Os06g28610NANA6+16278723..16279220hypothetical protein
LOC_Os06g28620NANA6+16281070..16281570retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28630OsAffx.4953.1.S1_at11/116+16301036..16304077expressed protein
LOC_Os06g28630Os.12606.1.S1_at10/116+16301036..16304077expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27853.1.S1_at--776--3571Chr06:16275364..16275388 (25 bp)
CATAGGGTCACCCTGTTGATTGCAG
LOC_Os06g28600
OsAffx.27853.1.S1_at--1122--3851Chr06:16275376..16275400 (25 bp)
CTGTTGATTGCAGGCAGCCAGCTAT
LOC_Os06g28600
OsAffx.27853.1.S1_at--160--6651Chr06:16275378..16275402 (25 bp)
GTTGATTGCAGGCAGCCAGCTATAT
LOC_Os06g28600
OsAffx.27853.1.S1_at--986--10711Chr06:16275383..16275407 (25 bp)
TTGCAGGCAGCCAGCTATATGCCGA
LOC_Os06g28600
OsAffx.27853.1.S1_at--130--3491Chr06:16275386..16275410 (25 bp)
CAGGCAGCCAGCTATATGCCGACAA
LOC_Os06g28600
OsAffx.27853.1.S1_at--899--5071Chr06:16275389..16275413 (25 bp)
GCAGCCAGCTATATGCCGACAACCT
LOC_Os06g28600
OsAffx.27853.1.S1_at--750--931Chr06:16276147..16276171 (25 bp)
AGGCACAGTCGCACAGAGGGTGTTA
LOC_Os06g28600
OsAffx.27853.1.S1_at--448--9351Chr06:16276155..16276179 (25 bp)
TCGCACAGAGGGTGTTAGGATAGCA
LOC_Os06g28600
OsAffx.27853.1.S1_at--192--8511Chr06:16276203..16276227 (25 bp)
TGGCAGCCTTGCACCTTGCAGGGTG
LOC_Os06g28600
OsAffx.27853.1.S1_at--294--1671Chr06:16276207..16276231 (25 bp)
AGCCTTGCACCTTGCAGGGTGTCAA
LOC_Os06g28600
OsAffx.27853.1.S1_at--132--1751Chr06:16276215..16276239 (25 bp)
ACCTTGCAGGGTGTCAAACATCGCC
LOC_Os06g28600
Target Sequence 
CATAGGGTCACCCTGTTGATTGCAGGCAGCCAGCTATATGCCGACAACCTCACCAAAGAAGAGAGAATGGAGGGAGAGAG
AGGAAAAGAGAGAAACGAGGGAGGAATGATTTGGAAGCAGGGGATGAGGCACAGTCGCACAGAGGGTGTTAGGATAGCAG
GACATGTGGAAAAGGGAGGACGTGGCAGCCTTGCACCTTGCAGGGTGTCAAACATCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis