Browse Element(s) Details


OsAffx.15646.1.S1_at

Description tigr:9634.m02731
TID=OsAffx.15646.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2856011/11hypothetical protein
LOC_Os09g020301/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28530Os.27088.1.A1_x_at9/116+16234166..16236118retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g28530Os.46012.2.S1_x_at3/116+16234166..16236118retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g28540NANA6+16240812..16242447hypothetical protein
LOC_Os06g28550Os.56372.1.S1_at11/116+16243362..16246114Isoflavone reductase homolog, putative, expressed
LOC_Os06g28550Os.45902.1.A1_x_at1/116+16243362..16246114Isoflavone reductase homolog, putative, expressed
LOC_Os06g28560OsAffx.15646.1.S1_at11/116+16250106..16251884hypothetical protein
LOC_Os06g28570OsAffx.15647.1.S1_at11/116+16253841..16254297hypothetical protein
LOC_Os06g28580OsAffx.15648.1.S1_at11/116+16255368..16256590hypothetical protein
LOC_Os06g28590Os.52358.1.S1_at11/116+16263258..16269838U-box domain containing protein, expressed
LOC_Os06g28600OsAffx.27853.1.S1_at11/116+16275334..16277038hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15646.1.S1_at--31--2651Chr06:16250632..16250656 (25 bp)
AACCAGGACATGCACAGACTCCAGC
LOC_Os06g28560
OsAffx.15646.1.S1_at--445--4191Chr06:16250812..16250833 (22 bp)
CCCCGGCTAGGTTGCAGATAAGGCT
LOC_Os06g28560
OsAffx.15646.1.S1_at--961--9772Chr06:16251342..16251363 (22 bp)
TAAGGCTTCAGCTTGAGCAGATTGC
LOC_Os06g28560
OsAffx.15646.1.S1_at--214--1531Chr06:16251354..16251378 (25 bp)
AGCAGATTGCAGTCACATCGGCGCG
LOC_Os06g28560
OsAffx.15646.1.S1_at--16--5052Chr06:16251503..16251527 (25 bp)
GCAGACTTGCAGTTGTAGCATCGTA
LOC_Os06g28560
OsAffx.15646.1.S1_at--137--3551Chr06:16251521..16251545 (25 bp)
CATCGTAGGCGAAGCAAATGGCAGA
LOC_Os06g28560
OsAffx.15646.1.S1_at--163--4931Chr06:16251573..16251714 (25 bp)
GCTTGGCCAGAGAGACGTGCTTATT
LOC_Os06g28560
OsAffx.15646.1.S1_at--359--1911Chr06:16251704..16251728 (25 bp)
ACGTGCTTATTCTTGGCTCTTGGCT
LOC_Os06g28560
OsAffx.15646.1.S1_at--835--5432Chr06:16251783..16251807 (25 bp)
GAACCTGTTGTTGCTGATCCTAATG
LOC_Os06g28560
OsAffx.15646.1.S1_at--789--2931Chr06:16251809..16251833 (25 bp)
AAGGCATGGGACTCAAATTCAGAAC
LOC_Os06g28560
OsAffx.15646.1.S1_at--909--8951Chr06:16251827..16251851 (25 bp)
TCAGAACAAGAACAGCCACCGGAAG
LOC_Os06g28560
Target Sequence 
AACCAGGACATGCACAGACTCCAGCCTCCCCGCGCCTCATCGCCACCGACAAGCCGACGCCGACGCCGGCCTCCCCGCGC
CTCGCCACCACCGACAAGCTGACCCCGTGCTTCCCCACTAGGCCGCCGACGCCGCCACCACCGTCGCTGTCGCGGCGCCG
CCCTCATCCTCTCCCGCTCGCCCCGGCTAGGTTGCAGATAAGGCTTCAGCTTGAGCAGATTGCAGTCACATCGGCGCGGC
CACGCGCCCGGCCGGCCGGCCGGTTGCAGACTTGCAGTTGTAGCATCGTAGGCGAAGCAAATGGCAGAGCAGCAGGAGCA
GGGGACAAGGAAAAAGCTTGGCCAGAGAGACGTGCTTATTCTTGGCTCTTGGCTCTTGCTAAAATTTCAGGAATGAGGGA
ATTCTTGGTTGATTTGAGGAGCCAGGAGGAACCTGTTGTTGCTGATCCTAATGGAAGGCATGGGACTCAAATTCAGAACA
AGAACAGCCACCGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis